OMPF_XENNA
ID OMPF_XENNA Reviewed; 369 AA.
AC Q56828; D3VBL0;
DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT 15-JUN-2010, sequence version 2.
DT 03-AUG-2022, entry version 123.
DE RecName: Full=Outer membrane porin F;
DE AltName: Full=Outer membrane protein F;
DE AltName: Full=Outer membrane protein OpnP;
DE AltName: Full=Porin OmpF;
DE Flags: Precursor;
GN Name=ompF; Synonyms=opnP; OrderedLocusNames=XNC1_1586;
OS Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / CCUG 14189 / LMG
OS 1036 / NCIMB 9965 / AN6).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Morganellaceae; Xenorhabdus.
OX NCBI_TaxID=406817;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=ATCC 19061 / DSM 3370 / CCUG 14189 / LMG 1036 / NCIMB 9965 / AN6;
RX PubMed=8817498; DOI=10.1111/j.1365-2958.1995.mmi_18040779.x;
RA Forst S., Waukau J., Leisman G., Exner M., Hancock R.;
RT "Functional and regulatory analysis of the OmpF-like porin, OpnP, of the
RT symbiotic bacterium Xenorhabdus nematophilus.";
RL Mol. Microbiol. 18:779-789(1995).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 19061 / DSM 3370 / CCUG 14189 / LMG 1036 / NCIMB 9965 / AN6;
RX PubMed=22125637; DOI=10.1371/journal.pone.0027909;
RA Chaston J.M., Suen G., Tucker S.L., Andersen A.W., Bhasin A., Bode E.,
RA Bode H.B., Brachmann A.O., Cowles C.E., Cowles K.N., Darby C., de Leon L.,
RA Drace K., Du Z., Givaudan A., Herbert Tran E.E., Jewell K.A., Knack J.J.,
RA Krasomil-Osterfeld K.C., Kukor R., Lanois A., Latreille P.,
RA Leimgruber N.K., Lipke C.M., Liu R., Lu X., Martens E.C., Marri P.R.,
RA Medigue C., Menard M.L., Miller N.M., Morales-Soto N., Norton S.,
RA Ogier J.C., Orchard S.S., Park D., Park Y., Qurollo B.A., Sugar D.R.,
RA Richards G.R., Rouy Z., Slominski B., Slominski K., Snyder H., Tjaden B.C.,
RA van der Hoeven R., Welch R.D., Wheeler C., Xiang B., Barbazuk B.,
RA Gaudriault S., Goodner B., Slater S.C., Forst S., Goldman B.S.,
RA Goodrich-Blair H.;
RT "The entomopathogenic bacterial endosymbionts xenorhabdus and photorhabdus:
RT convergent lifestyles from divergent genomes.";
RL PLoS ONE 6:E27909-E27909(2011).
CC -!- FUNCTION: Forms pores that allow passive diffusion of small molecules
CC across the outer membrane. {ECO:0000250}.
CC -!- SUBUNIT: Homotrimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cell outer membrane; Multi-pass membrane protein.
CC -!- SIMILARITY: Belongs to the Gram-negative porin family. {ECO:0000305}.
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DR EMBL; L40919; AAB41114.1; -; Genomic_DNA.
DR EMBL; FN667742; CBJ89649.1; -; Genomic_DNA.
DR PIR; S70847; S70847.
DR RefSeq; WP_013183934.1; NC_014228.1.
DR AlphaFoldDB; Q56828; -.
DR SMR; Q56828; -.
DR STRING; 406817.XNC1_1586; -.
DR TCDB; 1.B.1.1.6; the general bacterial porin (gbp) family.
DR PRIDE; Q56828; -.
DR EnsemblBacteria; CBJ89649; CBJ89649; XNC1_1586.
DR KEGG; xne:XNC1_1586; -.
DR eggNOG; COG3203; Bacteria.
DR HOGENOM; CLU_058202_0_0_6; -.
DR OMA; MYQNNDN; -.
DR Proteomes; UP000008075; Chromosome.
DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0046930; C:pore complex; IEA:UniProtKB-KW.
DR GO; GO:0015288; F:porin activity; IEA:UniProtKB-KW.
DR GO; GO:0034220; P:ion transmembrane transport; IEA:InterPro.
DR CDD; cd00342; gram_neg_porins; 1.
DR Gene3D; 2.40.160.10; -; 1.
DR InterPro; IPR033900; Gram_neg_porin_domain.
DR InterPro; IPR023614; Porin_dom_sf.
DR InterPro; IPR001897; Porin_gammaproteobac.
DR InterPro; IPR001702; Porin_Gram-ve.
DR InterPro; IPR013793; Porin_Gram-ve_CS.
DR Pfam; PF00267; Porin_1; 1.
DR PRINTS; PR00183; ECOLIPORIN.
DR PRINTS; PR00182; ECOLNEIPORIN.
DR PROSITE; PS00576; GRAM_NEG_PORIN; 1.
PE 3: Inferred from homology;
KW Cell outer membrane; Ion transport; Membrane; Porin; Reference proteome;
KW Signal; Transmembrane; Transmembrane beta strand; Transport.
FT SIGNAL 1..21
FT /evidence="ECO:0000250"
FT CHAIN 22..369
FT /note="Outer membrane porin F"
FT /id="PRO_0000025240"
FT TRANSMEM 22..27
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 28
FT /note="Periplasmic"
FT /evidence="ECO:0000250"
FT TRANSMEM 29..44
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 45..55
FT /note="Extracellular"
FT /evidence="ECO:0000250"
FT TRANSMEM 56..68
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 69..70
FT /note="Periplasmic"
FT /evidence="ECO:0000250"
FT TRANSMEM 71..83
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 84..97
FT /note="Extracellular"
FT /evidence="ECO:0000250"
FT TRANSMEM 98..106
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 107..108
FT /note="Periplasmic"
FT /evidence="ECO:0000250"
FT TRANSMEM 109..115
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 116..150
FT /note="Extracellular"
FT /evidence="ECO:0000250"
FT TRANSMEM 151..157
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 158..165
FT /note="Periplasmic"
FT /evidence="ECO:0000250"
FT TRANSMEM 166..177
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 178..193
FT /note="Extracellular"
FT /evidence="ECO:0000250"
FT TRANSMEM 194..204
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 205..206
FT /note="Periplasmic"
FT /evidence="ECO:0000250"
FT TRANSMEM 207..219
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 220..234
FT /note="Extracellular"
FT /evidence="ECO:0000250"
FT TRANSMEM 235..246
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 247
FT /note="Periplasmic"
FT /evidence="ECO:0000250"
FT TRANSMEM 248..259
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 260..278
FT /note="Extracellular"
FT /evidence="ECO:0000250"
FT TRANSMEM 279..291
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 292..294
FT /note="Periplasmic"
FT /evidence="ECO:0000250"
FT TRANSMEM 295..308
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 309..320
FT /note="Extracellular"
FT /evidence="ECO:0000250"
FT TRANSMEM 321..332
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 333..334
FT /note="Periplasmic"
FT /evidence="ECO:0000250"
FT TRANSMEM 335..344
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT TOPO_DOM 345..359
FT /note="Extracellular"
FT /evidence="ECO:0000250"
FT TRANSMEM 360..369
FT /note="Beta stranded"
FT /evidence="ECO:0000250"
FT CONFLICT 118
FT /note="G -> R (in Ref. 1; AAB41114)"
FT /evidence="ECO:0000305"
FT CONFLICT 137
FT /note="A -> P (in Ref. 1; AAB41114)"
FT /evidence="ECO:0000305"
FT CONFLICT 170
FT /note="A -> R (in Ref. 1; AAB41114)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 369 AA; 40641 MW; 5B03C898AD8EA57C CRC64;
MKRNILAVVI PALLVAGTAN AAEIFNKDGN KLDLYGKVDV RHQFADKRSS EDGDDSYARI
GIKGETQISD QLTGFGRWEY NVKAKGTEAA VAESSTRLAF AGLKFANYGS LDYGRNYGVN
YDVNAWTDVL PIFGGDAMAQ TDNFMTGRST GLLTYRNTDF FGLVDGLNFA LQYQGQNSDR
TKNKGRDTER SNGDGYGLSS TYDVGYGITV GGSYANSART ADQKEKVSDA YGKRAEAWNI
GAKYDANNVY LAAMYGETRN MTRYTRTIAD TDATLIANKT QNIELTAQYL FSDLGLKPSL
AYVQSKGKDL TEGKGFNGDL VKYVSVGTYY YFNKNLSTYV DYKINLLKKD NELGVNARNV
FGVGLTYQF
