OPR13_ORYSJ
ID OPR13_ORYSJ Reviewed; 376 AA.
AC B9FFD3; A0A0P0WAZ6;
DT 28-JUN-2011, integrated into UniProtKB/Swiss-Prot.
DT 24-MAR-2009, sequence version 1.
DT 03-AUG-2022, entry version 56.
DE RecName: Full=Putative 12-oxophytodienoate reductase 13;
DE EC=1.3.1.-;
DE AltName: Full=OPDA-reductase 13;
DE Short=OsOPR13;
GN Name=OPR13; Synonyms=OPR9; OrderedLocusNames=Os04g0443801;
GN ORFNames=OsJ_14925;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Putative oxophytodienoate reductase that may be involved in
CC the biosynthesis or metabolism of oxylipin signaling molecules.
CC {ECO:0000250}.
CC -!- COFACTOR:
CC Name=FMN; Xref=ChEBI:CHEBI:58210;
CC -!- SIMILARITY: Belongs to the NADH:flavin oxidoreductase/NADH oxidase
CC family. {ECO:0000305}.
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DR EMBL; AP008210; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014960; BAS89368.1; -; Genomic_DNA.
DR EMBL; CM000141; EEE61067.1; -; Genomic_DNA.
DR EMBL; AK073836; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015620839.1; XM_015765353.1.
DR RefSeq; XP_015620840.1; XM_015765354.1.
DR RefSeq; XP_015637023.1; XM_015781537.1.
DR AlphaFoldDB; B9FFD3; -.
DR SMR; B9FFD3; -.
DR STRING; 4530.OS04T0443801-02; -.
DR PaxDb; B9FFD3; -.
DR PRIDE; B9FFD3; -.
DR EnsemblPlants; Os04t0443801-02; Os04t0443801-02; Os04g0443801.
DR EnsemblPlants; Os04t0443801-03; Os04t0443801-03; Os04g0443801.
DR GeneID; 107277381; -.
DR GeneID; 107279822; -.
DR Gramene; Os04t0443801-02; Os04t0443801-02; Os04g0443801.
DR Gramene; Os04t0443801-03; Os04t0443801-03; Os04g0443801.
DR KEGG; osa:107277381; -.
DR KEGG; osa:107279822; -.
DR eggNOG; KOG0134; Eukaryota.
DR HOGENOM; CLU_012153_0_2_1; -.
DR InParanoid; B9FFD3; -.
DR OMA; QIWGQGR; -.
DR OrthoDB; 705978at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR ExpressionAtlas; B9FFD3; baseline and differential.
DR Genevisible; B9FFD3; OS.
DR GO; GO:0010181; F:FMN binding; IEA:InterPro.
DR GO; GO:0016491; F:oxidoreductase activity; IBA:GO_Central.
DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-KW.
DR GO; GO:0031408; P:oxylipin biosynthetic process; IEA:UniProtKB-KW.
DR Gene3D; 3.20.20.70; -; 1.
DR InterPro; IPR013785; Aldolase_TIM.
DR InterPro; IPR001155; OxRdtase_FMN_N.
DR InterPro; IPR045247; Oye-like.
DR PANTHER; PTHR22893; PTHR22893; 1.
DR Pfam; PF00724; Oxidored_FMN; 1.
PE 2: Evidence at transcript level;
KW Fatty acid biosynthesis; Fatty acid metabolism; Flavoprotein; FMN;
KW Lipid biosynthesis; Lipid metabolism; NADP; Oxidoreductase;
KW Oxylipin biosynthesis; Reference proteome.
FT CHAIN 1..376
FT /note="Putative 12-oxophytodienoate reductase 13"
FT /id="PRO_0000410719"
FT BINDING 25..27
FT /ligand="FMN"
FT /ligand_id="ChEBI:CHEBI:58210"
FT /evidence="ECO:0000250"
FT BINDING 58
FT /ligand="FMN"
FT /ligand_id="ChEBI:CHEBI:58210"
FT /evidence="ECO:0000250"
FT BINDING 99
FT /ligand="FMN"
FT /ligand_id="ChEBI:CHEBI:58210"
FT /evidence="ECO:0000250"
FT BINDING 165..168
FT /ligand="substrate"
FT /evidence="ECO:0000250"
FT BINDING 217
FT /ligand="FMN"
FT /ligand_id="ChEBI:CHEBI:58210"
FT /evidence="ECO:0000250"
FT BINDING 301
FT /ligand="FMN"
FT /ligand_id="ChEBI:CHEBI:58210"
FT /evidence="ECO:0000250"
FT BINDING 322..323
FT /ligand="FMN"
FT /ligand_id="ChEBI:CHEBI:58210"
FT /evidence="ECO:0000250"
FT CONFLICT 93
FT /note="G -> D (in Ref. 5; AK073836)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 376 AA; 41893 MW; 9D305D6E2CA61C41 CRC64;
MDPVPLFNPC EMGRFTFSHR IVLAPLTRAR SYGNLPQSHA ILYYSQRATK GGLLISEATG
VSSDAPCTNT PGIWTKEQVE AWKPVVDAVH AKGGIFFCQI WHVGRASDLE QEPISSTDKP
VEKNEDMDFP VPRRLAVEEI PDVINHFRIA ARNAIDAGFD GVEVHGAHGF LLEQFMKDGV
NDRADEYGGS LQNRCRFALE VIDAVSTEVG PDRVGFRISP YISYYGCHDS DPDALGVYMA
RELDRRGVLY CSAVEPEMVA ATTVVDGETT TTTMSRRMMI PHRLHGMREA FRRGMFMVGG
GYDRDAGNMA VASGYADMVV FGRLFLANPD LPRRFQLDAP LNKYDRATFY THDPVVGYTD
YPFLDDDREA MSDHTG
