ORR23_ORYSJ
ID ORR23_ORYSJ Reviewed; 688 AA.
AC Q6K8X6; A0A0P0VQP7;
DT 16-SEP-2015, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 136.
DE RecName: Full=Two-component response regulator ORR23 {ECO:0000305};
DE AltName: Full=OsRRB5 {ECO:0000303|PubMed:16891544};
GN Name=RR23 {ECO:0000303|PubMed:17284581};
GN Synonyms=ORR3 {ECO:0000303|PubMed:16919402};
GN OrderedLocusNames=Os02g0796500 {ECO:0000312|EMBL:BAF10303.1},
GN LOC_Os02g55320 {ECO:0000305};
GN ORFNames=OJ1004_E04.14 {ECO:0000312|EMBL:BAD19083.1},
GN OJ1695_H09.29 {ECO:0000312|EMBL:BAD19284.1},
GN OsJ_08721 {ECO:0000312|EMBL:EEE57977.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16919402; DOI=10.1016/j.gene.2006.06.020;
RA Ito Y., Kurata N.;
RT "Identification and characterization of cytokinin-signalling gene families
RT in rice.";
RL Gene 382:57-65(2006).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP DISRUPTION PHENOTYPE.
RX PubMed=16891544; DOI=10.1104/pp.106.086371;
RA Pareek A., Singh A., Kumar M., Kushwaha H.R., Lynn A.M.,
RA Singla-Pareek S.L.;
RT "Whole-genome analysis of Oryza sativa reveals similar architecture of two-
RT component signaling machinery with Arabidopsis.";
RL Plant Physiol. 142:380-397(2006).
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17284581; DOI=10.1104/pp.106.093666;
RA Schaller G.E., Doi K., Hwang I., Kieber J.J., Khurana J.P., Kurata N.,
RA Mizuno T., Pareek A., Shiu S.H., Wu P., Yip W.K.;
RT "Nomenclature for two-component signaling elements of rice.";
RL Plant Physiol. 143:555-557(2007).
RN [9]
RP SUBCELLULAR LOCATION.
RX PubMed=22383541; DOI=10.1104/pp.111.192765;
RA Tsai Y.C., Weir N.R., Hill K., Zhang W., Kim H.J., Shiu S.H.,
RA Schaller G.E., Kieber J.J.;
RT "Characterization of genes involved in cytokinin signaling and metabolism
RT from rice.";
RL Plant Physiol. 158:1666-1684(2012).
CC -!- FUNCTION: Transcriptional activator that binds specific DNA sequence.
CC Functions as a response regulator involved in His-to-Asp phosphorelay
CC signal transduction system. Phosphorylation of the Asp residue in the
CC receiver domain activates the ability of the protein to promote the
CC transcription of target genes. May directly activate some type-A
CC response regulators in response to cytokinins.
CC {ECO:0000250|UniProtKB:Q940D0}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625,
CC ECO:0000269|PubMed:22383541}.
CC -!- PTM: Two-component system major event consists of a His-to-Asp
CC phosphorelay between a sensor histidine kinase (HK) and a response
CC regulator (RR). In plants, the His-to-Asp phosphorelay involves an
CC additional intermediate named Histidine-containing phosphotransfer
CC protein (HPt). This multistep phosphorelay consists of a His-Asp-His-
CC Asp sequential transfer of a phosphate group between first an His and
CC an Asp of the HK protein, followed by the transfer to a conserved His
CC of the HPt protein and finally the transfer to an Asp in the receiver
CC domain of the RR protein. {ECO:0000305}.
CC -!- DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering, lesion mimic,
CC late heading and low fertility phenotypes.
CC {ECO:0000269|PubMed:16891544}.
CC -!- SIMILARITY: Belongs to the ARR family. Type-B subfamily. {ECO:0000305}.
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DR EMBL; BR000252; FAA00256.1; -; Genomic_DNA.
DR EMBL; AP003975; BAD19083.1; -; Genomic_DNA.
DR EMBL; AP004094; BAD19284.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF10303.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS81367.1; -; Genomic_DNA.
DR EMBL; CM000139; EEE57977.1; -; Genomic_DNA.
DR EMBL; AK099581; BAG94206.1; -; mRNA.
DR EMBL; AK120648; BAH00108.1; -; mRNA.
DR RefSeq; XP_015625496.1; XM_015770010.1.
DR AlphaFoldDB; Q6K8X6; -.
DR SMR; Q6K8X6; -.
DR STRING; 4530.OS02T0796500-01; -.
DR PaxDb; Q6K8X6; -.
DR PRIDE; Q6K8X6; -.
DR EnsemblPlants; Os02t0796500-01; Os02t0796500-01; Os02g0796500.
DR EnsemblPlants; Os02t0796500-02; Os02t0796500-02; Os02g0796500.
DR EnsemblPlants; Os02t0796500-03; Os02t0796500-03; Os02g0796500.
DR GeneID; 4331008; -.
DR Gramene; Os02t0796500-01; Os02t0796500-01; Os02g0796500.
DR Gramene; Os02t0796500-02; Os02t0796500-02; Os02g0796500.
DR Gramene; Os02t0796500-03; Os02t0796500-03; Os02g0796500.
DR KEGG; osa:4331008; -.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_024359_0_0_1; -.
DR InParanoid; Q6K8X6; -.
DR OMA; AECTQAK; -.
DR OrthoDB; 332559at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6K8X6; OS.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0009736; P:cytokinin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
DR InterPro; IPR045279; ARR-like.
DR InterPro; IPR011006; CheY-like_superfamily.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR017053; Response_reg_B-typ_pln.
DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver.
DR PANTHER; PTHR43874; PTHR43874; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR Pfam; PF00072; Response_reg; 1.
DR PIRSF; PIRSF036392; RR_ARR_type-B; 1.
DR SMART; SM00448; REC; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR SUPFAM; SSF52172; SSF52172; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
DR PROSITE; PS50110; RESPONSE_REGULATORY; 1.
PE 2: Evidence at transcript level;
KW Activator; Cytokinin signaling pathway; DNA-binding; Nucleus;
KW Phosphoprotein; Reference proteome; Transcription;
KW Transcription regulation; Two-component regulatory system.
FT CHAIN 1..688
FT /note="Two-component response regulator ORR23"
FT /id="PRO_0000433844"
FT DOMAIN 25..140
FT /note="Response regulatory"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00169"
FT DNA_BIND 211..270
FT /note="Myb-like GARP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 161..212
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 76
FT /note="4-aspartylphosphate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00169"
SQ SEQUENCE 688 AA; 74384 MW; 47A54C30CD76CB37 CRC64;
MRAAEERKGV VPAARRRDQF PVGMRVLAVD DDPVCLKVLE TLLLRCQYHV TTTNQAAIAL
KMLRENRDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VLKGITHGAC
DYLLKPVRIE ELRNIWQHVI RRKFSTRDRA NLDFYEECNK PPNADSDHVH GHVTCGSPDQ
SGRPSKKRKE YCSEEEDEGE VNTQDIDDPS APKKPRVVWS VELHRKFVAA VNQLGIDKAV
PKRILELMNV EKLTRENVAS HLQKYRLYLK RLSAVASQQV SIVAALGGRD PFLHMGGFEG
LQGYQAFTSS AALSSFTPHG LLNSPRNNPA ALGTQGVPAS KSIQTMSGSH TLSHSINDAN
KYHLSLPGNQ KGNLGQGLAT SLGQTQMQQK WIHEETDDLS TILSGNGLSN GMSGTLQSVT
SSPLLPQELA ECTQAKIVSQ PSIRTSSVSS EHIEGAVGVS SGLLESRVSQ QSTIPLSGFS
ANGLLIHGSF NNTCANKLGG TSSSCAPARS SNDLMVARDT KGGASSFGGA MLLPPDTEQK
YLNFGGGNGL KQKFDDRTAD SLFDLKFVWS SVPSSQLASN IGAHHAMSQR WNNSSSNSSN
IGARMIGQAT SSGSTVIPQM KTDFLVSGDM AMPKNASDLS IPKLQSELSS SSCSFDGLLN
SIVKVEKDDV TFSDDLGCGD FYSLGACI
