ORR25_ORYSJ
ID ORR25_ORYSJ Reviewed; 694 AA.
AC Q67W50; A1A6A6; Q0DAK5;
DT 16-SEP-2015, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 25-MAY-2022, entry version 120.
DE RecName: Full=Two-component response regulator ORR25 {ECO:0000305};
DE AltName: Full=OsRRB3 {ECO:0000303|PubMed:16891544};
GN Name=RR25 {ECO:0000303|PubMed:17284581};
GN Synonyms=ORR5 {ECO:0000303|PubMed:16919402};
GN OrderedLocusNames=Os06g0647200 {ECO:0000312|EMBL:BAF20118.2},
GN LOC_Os06g43910 {ECO:0000305};
GN ORFNames=OJ1226_A12.26 {ECO:0000312|EMBL:BAD37619.1},
GN OSJNBa0062J02.10 {ECO:0000312|EMBL:BAD37322.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16919402; DOI=10.1016/j.gene.2006.06.020;
RA Ito Y., Kurata N.;
RT "Identification and characterization of cytokinin-signalling gene families
RT in rice.";
RL Gene 382:57-65(2006).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP DISRUPTION PHENOTYPE.
RX PubMed=16891544; DOI=10.1104/pp.106.086371;
RA Pareek A., Singh A., Kumar M., Kushwaha H.R., Lynn A.M.,
RA Singla-Pareek S.L.;
RT "Whole-genome analysis of Oryza sativa reveals similar architecture of two-
RT component signaling machinery with Arabidopsis.";
RL Plant Physiol. 142:380-397(2006).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17284581; DOI=10.1104/pp.106.093666;
RA Schaller G.E., Doi K., Hwang I., Kieber J.J., Khurana J.P., Kurata N.,
RA Mizuno T., Pareek A., Shiu S.H., Wu P., Yip W.K.;
RT "Nomenclature for two-component signaling elements of rice.";
RL Plant Physiol. 143:555-557(2007).
CC -!- FUNCTION: Transcriptional activator that binds specific DNA sequence.
CC Functions as a response regulator involved in His-to-Asp phosphorelay
CC signal transduction system. Phosphorylation of the Asp residue in the
CC receiver domain activates the ability of the protein to promote the
CC transcription of target genes. May directly activate some type-A
CC response regulators in response to cytokinins.
CC {ECO:0000250|UniProtKB:Q940D0}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- PTM: Two-component system major event consists of a His-to-Asp
CC phosphorelay between a sensor histidine kinase (HK) and a response
CC regulator (RR). In plants, the His-to-Asp phosphorelay involves an
CC additional intermediate named Histidine-containing phosphotransfer
CC protein (HPt). This multistep phosphorelay consists of a His-Asp-His-
CC Asp sequential transfer of a phosphate group between first an His and
CC an Asp of the HK protein, followed by the transfer to a conserved His
CC of the HPt protein and finally the transfer to an Asp in the receiver
CC domain of the RR protein. {ECO:0000305}.
CC -!- DISRUPTION PHENOTYPE: Dwarf, chlorina, lesion mimic, abnormal shoot,
CC low tillering and low fertility phenotypes.
CC {ECO:0000269|PubMed:16891544}.
CC -!- SIMILARITY: Belongs to the ARR family. Type-B subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF20118.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=FAA00258.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; BR000254; FAA00258.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP003517; BAD37322.1; -; Genomic_DNA.
DR EMBL; AP004008; BAD37619.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20118.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; Q67W50; -.
DR SMR; Q67W50; -.
DR STRING; 4530.OS06T0647200-02; -.
DR PaxDb; Q67W50; -.
DR PRIDE; Q67W50; -.
DR eggNOG; KOG1601; Eukaryota.
DR InParanoid; Q67W50; -.
DR OrthoDB; 332559at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q67W50; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0009736; P:cytokinin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
DR InterPro; IPR045279; ARR-like.
DR InterPro; IPR011006; CheY-like_superfamily.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver.
DR PANTHER; PTHR43874; PTHR43874; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR Pfam; PF00072; Response_reg; 1.
DR SMART; SM00448; REC; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR SUPFAM; SSF52172; SSF52172; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
DR PROSITE; PS50110; RESPONSE_REGULATORY; 1.
PE 3: Inferred from homology;
KW Activator; Cytokinin signaling pathway; DNA-binding; Nucleus;
KW Phosphoprotein; Reference proteome; Transcription;
KW Transcription regulation; Two-component regulatory system.
FT CHAIN 1..694
FT /note="Two-component response regulator ORR25"
FT /id="PRO_0000433848"
FT DOMAIN 17..132
FT /note="Response regulatory"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00169"
FT DOMAIN 183..242
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 213..238
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 326..349
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 335..349
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 68
FT /note="4-aspartylphosphate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00169"
SQ SEQUENCE 694 AA; 76624 MW; 21F186FF7045E649 CRC64;
MAATQATAAR KFPEGLRVLA VDDSPVCLML LEALLRRCKY QPTMTRDAAT ALRMLRERPG
DFDLVISDVH MLDMDGFKLL ELIGLEMDLP VIMQSANGEL ETMMKGVTHG ACDYLVKPVS
LKDIQNIWQH VWRKRKLDIR NHNGGYNDGG ELVGATRTKR KYTRKMRNDG DNYGENKENM
DSTLKRQRVV WTPELHRDFV IAVHELGVDR AVPRKILRMM KVDYMTRENI ASHLQKYRLY
LKRISTQTGM DPDQFPEKWK YMNELDALKN YCENGRYRLT PAIASSSSSN PFARMNSASA
LATNGFLPTH SVQLKNSQRN MAMGTVGHGG SPGNNPVFQP LQNSSNARKC FPSGPSGSSF
ANISNGLVLD TDDSGSSYAG MFCKSMWETS NGSPSCHSGN SSANKSNNGV SAPANQFQVQ
SKFGFSALAN QFPVQSNCGF SAPANQYQVQ SNGGFSVPAN QFPVQSNGEF LAPTNQFPVQ
YPEVNNQPLV QMNQSSTNHF STIGNDYQFP DLANCSKYWQ PTAPSMFPDL GHNDGTSFRP
SQANIANINQ LSSFAASSGQ EPMFGDELHG QMSPIMSTIS LSDFDDQMGS FNIGNDTSPA
EMMHDNFSLG SDSNISSSTP TDSSFGSTFP DFHLDSPEMP AQMLNGGDED GILLPVLDDT
VDQQDLFDQL DENNGREKLG SGRCVRKGPF ECFF
