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ORR29_ORYSJ
ID   ORR29_ORYSJ             Reviewed;         390 AA.
AC   Q7XS69; C7J105;
DT   16-SEP-2015, integrated into UniProtKB/Swiss-Prot.
DT   16-SEP-2015, sequence version 3.
DT   03-AUG-2022, entry version 106.
DE   RecName: Full=Two-component response regulator ORR29 {ECO:0000305};
DE   AltName: Full=OsRRB7 {ECO:0000303|PubMed:16891544};
GN   Name=RR29 {ECO:0000303|PubMed:17284581};
GN   OrderedLocusNames=Os04g0348800 {ECO:0000312|EMBL:BAH92613.1},
GN   LOC_Os04g28130 {ECO:0000305};
GN   ORFNames=OSJNBa0020I02.17 {ECO:0000312|EMBL:CAE02104.2};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12447439; DOI=10.1038/nature01183;
RA   Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA   Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA   Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA   Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA   Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA   Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA   Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA   Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA   Li J., Hong G., Xue Y., Han B.;
RT   "Sequence and analysis of rice chromosome 4.";
RL   Nature 420:316-320(2002).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   DISRUPTION PHENOTYPE.
RX   PubMed=16891544; DOI=10.1104/pp.106.086371;
RA   Pareek A., Singh A., Kumar M., Kushwaha H.R., Lynn A.M.,
RA   Singla-Pareek S.L.;
RT   "Whole-genome analysis of Oryza sativa reveals similar architecture of two-
RT   component signaling machinery with Arabidopsis.";
RL   Plant Physiol. 142:380-397(2006).
RN   [6]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=17284581; DOI=10.1104/pp.106.093666;
RA   Schaller G.E., Doi K., Hwang I., Kieber J.J., Khurana J.P., Kurata N.,
RA   Mizuno T., Pareek A., Shiu S.H., Wu P., Yip W.K.;
RT   "Nomenclature for two-component signaling elements of rice.";
RL   Plant Physiol. 143:555-557(2007).
RN   [7]
RP   FUNCTION, AND SUBCELLULAR LOCATION.
RX   PubMed=22383541; DOI=10.1104/pp.111.192765;
RA   Tsai Y.C., Weir N.R., Hill K., Zhang W., Kim H.J., Shiu S.H.,
RA   Schaller G.E., Kieber J.J.;
RT   "Characterization of genes involved in cytokinin signaling and metabolism
RT   from rice.";
RL   Plant Physiol. 158:1666-1684(2012).
CC   -!- FUNCTION: Transcriptional activator that binds specific DNA sequence.
CC       Functions as a response regulator involved in His-to-Asp phosphorelay
CC       signal transduction system. Phosphorylation of the Asp residue in the
CC       receiver domain activates the ability of the protein to promote the
CC       transcription of target genes. May directly activate some type-A
CC       response regulators in response to cytokinins (By similarity).
CC       Functions as a response regulator in response to cytokinins
CC       (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0,
CC       ECO:0000269|PubMed:22383541}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm, cytosol {ECO:0000269|PubMed:22383541}.
CC       Nucleus {ECO:0000269|PubMed:22383541}.
CC   -!- PTM: Two-component system major event consists of a His-to-Asp
CC       phosphorelay between a sensor histidine kinase (HK) and a response
CC       regulator (RR). In plants, the His-to-Asp phosphorelay involves an
CC       additional intermediate named Histidine-containing phosphotransfer
CC       protein (HPt). This multistep phosphorelay consists of a His-Asp-His-
CC       Asp sequential transfer of a phosphate group between first an His and
CC       an Asp of the HK protein, followed by the transfer to a conserved His
CC       of the HPt protein and finally the transfer to an Asp in the receiver
CC       domain of the RR protein. {ECO:0000305}.
CC   -!- DISRUPTION PHENOTYPE: Dwarf, narrow leaf, lesion mimic, low tillering
CC       and late heading phenotypes. {ECO:0000269|PubMed:16891544}.
CC   -!- SIMILARITY: Belongs to the ARR family. Type-B subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAH92613.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=CAE02104.2; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR   EMBL; AL662963; CAE02104.2; ALT_INIT; Genomic_DNA.
DR   EMBL; AP008210; BAH92613.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   AlphaFoldDB; Q7XS69; -.
DR   SMR; Q7XS69; -.
DR   STRING; 4530.OS04T0348800-00; -.
DR   PaxDb; Q7XS69; -.
DR   PRIDE; Q7XS69; -.
DR   eggNOG; KOG1601; Eukaryota.
DR   InParanoid; Q7XS69; -.
DR   Proteomes; UP000000763; Chromosome 4.
DR   Proteomes; UP000059680; Chromosome 4.
DR   GO; GO:0005829; C:cytosol; IDA:UniProtKB.
DR   GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0009736; P:cytokinin-activated signaling pathway; IDA:UniProtKB.
DR   GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
DR   InterPro; IPR045279; ARR-like.
DR   InterPro; IPR011006; CheY-like_superfamily.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR006447; Myb_dom_plants.
DR   InterPro; IPR001789; Sig_transdc_resp-reg_receiver.
DR   PANTHER; PTHR43874; PTHR43874; 1.
DR   Pfam; PF00072; Response_reg; 1.
DR   SMART; SM00448; REC; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52172; SSF52172; 1.
DR   TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR   PROSITE; PS50110; RESPONSE_REGULATORY; 1.
PE   3: Inferred from homology;
KW   Activator; Cytokinin signaling pathway; Cytoplasm; DNA-binding; Nucleus;
KW   Phosphoprotein; Reference proteome; Transcription;
KW   Transcription regulation; Two-component regulatory system.
FT   CHAIN           1..390
FT                   /note="Two-component response regulator ORR29"
FT                   /id="PRO_0000433853"
FT   DOMAIN          13..130
FT                   /note="Response regulatory"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00169"
FT   DNA_BIND        169..226
FT                   /note="Myb-like GARP"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT   REGION          233..272
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          303..339
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        255..272
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         65
FT                   /note="4-aspartylphosphate"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00169"
SQ   SEQUENCE   390 AA;  43327 MW;  E3615CB43E8E81C6 CRC64;
     MAQKEGLPAG RLSAMVIDED KCHADSTSYM LSAELNFSVT VFTSPIKALD FLQNHAEGVD
     LVLADVHMEE MNGFDFLKVA RELHKSIQVI MMSTETTMYT MKRCVKLGAQ FLVNKPLDAG
     TIKNLWQYVD LKVLRMEKIK DLLQGIGDES TCANETNSLA ENPKNDTKKK YYLMWTPHLQ
     KKFLHALQIL GKDASPKNIK KIMGVDNIDC RQIAAHLQKH RLRLTKDLKK ASFTTDTSKD
     ESNSRIGPAE SHHVCRNAST LQPRSNTQPT ETTMQILSED AEYDDVYAAM RRALQYGIVF
     DESKHSSDPS GDEDEQVVVG GDQDGCANEA NDIDSSGDHH QVAAVVTKPC NANASQEIIN
     KMTNSDGMQA TKGSKAAVFR LVDYSESDSD
 
 
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