ORRM1_MAIZE
ID ORRM1_MAIZE Reviewed; 398 AA.
AC C0HFE5; A0A1D6HJ90;
DT 25-OCT-2017, integrated into UniProtKB/Swiss-Prot.
DT 05-MAY-2009, sequence version 1.
DT 03-AUG-2022, entry version 69.
DE RecName: Full=Organelle RRM domain-containing protein 1, chloroplastic {ECO:0000303|PubMed:23487777};
DE Short=ZmORRM1 {ECO:0000303|PubMed:23487777};
DE Flags: Precursor;
GN Name=ORRM1; ORFNames=ZEAMMB73_Zm00001d017930 {ECO:0000312|EMBL:AQK74547.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73;
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. B73;
RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA Walbot V., Yu Y.;
RT "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL PLoS Genet. 5:E1000740-E1000740(2009).
RN [3]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=23487777; DOI=10.1073/pnas.1220162110;
RA Sun T., Germain A., Giloteaux L., Hammani K., Barkan A., Hanson M.R.,
RA Bentolila S.;
RT "An RNA recognition motif-containing protein is required for plastid RNA
RT editing in Arabidopsis and maize.";
RL Proc. Natl. Acad. Sci. U.S.A. 110:E1169-E1178(2013).
CC -!- FUNCTION: Involved in C-to-U editing of chloroplastic RNA. Functions as
CC major chloroplastic editing factor. Controls a majority of the
CC chloroplastic editing sites. {ECO:0000269|PubMed:23487777}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC -!- DISRUPTION PHENOTYPE: Pale-green leaf phenotype.
CC {ECO:0000269|PubMed:23487777}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AQK74547.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; CM000781; AQK74547.1; ALT_SEQ; Genomic_DNA.
DR EMBL; BT061051; ACN25748.1; -; mRNA.
DR RefSeq; NP_001159310.1; NM_001165838.1.
DR RefSeq; XP_008643905.1; XM_008645683.1.
DR AlphaFoldDB; C0HFE5; -.
DR SMR; C0HFE5; -.
DR STRING; 4577.GRMZM5G899787_P01; -.
DR PRIDE; C0HFE5; -.
DR EnsemblPlants; Zm00001eb253560_T003; Zm00001eb253560_P003; Zm00001eb253560.
DR GeneID; 100304402; -.
DR Gramene; Zm00001eb253560_T003; Zm00001eb253560_P003; Zm00001eb253560.
DR KEGG; zma:100304402; -.
DR eggNOG; KOG0118; Eukaryota.
DR OrthoDB; 907370at2759; -.
DR Proteomes; UP000007305; Chromosome 5.
DR ExpressionAtlas; C0HFE5; baseline and differential.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:1900871; P:chloroplast mRNA modification; IMP:UniProtKB.
DR GO; GO:0016554; P:cytidine to uridine editing; IMP:UniProtKB.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IBA:GO_Central.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 3.30.70.80; -; 2.
DR InterPro; IPR039206; MORF/ORRM1/DAG-like.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR037045; S8pro/Inhibitor_I9_sf.
DR PANTHER; PTHR31346; PTHR31346; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR PROSITE; PS50102; RRM; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; mRNA processing; Plastid; Reference proteome; RNA-binding;
KW Transit peptide.
FT TRANSIT 1..88
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 89..398
FT /note="Organelle RRM domain-containing protein 1,
FT chloroplastic"
FT /id="PRO_0000441880"
FT DOMAIN 299..377
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT REGION 54..79
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 398 AA; 43021 MW; 581CAE465B1ECC64 CRC64;
MDTALPSVLI GGGLSVSVSI STATKAGSQS ISSHLSTSSL RLTARHRNRR RLPLLASSSE
SPPAQLAAAS TESQSRSSRW VVVMDTPPAA AGGSGVSRAE AVDYYAATLA QVVGSEKEAQ
MRICEASWDG TYEFRCEIDE DASKELAKMP GVLSVQLDMG NKSEKDNHSL SLSTANLVSI
SDGASTSSSG KNEFWLVRME KPGVEVVTKA QMVDHYTQIL MKVLGNEQDA QVSIYHVSWD
RDYGFCCHID EECAKELADV PGVLSVQPDT NFGSDNKNYK GDDGVKSSEG TGAVDIKTKR
LFVTGLSFYT SEKTLRAAFE PFGELVEVKI IMDRISKRSK GYAFVEYTTE EAGGAALKAM
NGQIINGWMI VVDVAKTRSR DRLSGGSNQA FRPHYQAR
