ORRM6_ARATH
ID ORRM6_ARATH Reviewed; 181 AA.
AC Q9FX45;
DT 10-MAY-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 142.
DE RecName: Full=Organelle RRM domain-containing protein 6, chloroplastic {ECO:0000303|PubMed:28213559};
DE Flags: Precursor;
GN Name=ORRM6 {ECO:0000303|PubMed:28213559};
GN OrderedLocusNames=At1g73530 {ECO:0000312|Araport:AT1G73530};
GN ORFNames=T9L24.48 {ECO:0000312|EMBL:AAG30979.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF Clones.";
RL Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP FUNCTION, INTERACTION WITH MORF8/RIP1; MORF2/RIP2; MORF9/RIP9 AND VAR3/OZ1,
RP SUBCELLULAR LOCATION, AND DISRUPTION PHENOTYPE.
RX PubMed=28213559; DOI=10.1104/pp.16.01623;
RA Hackett J.B., Shi X., Kobylarz A.T., Lucas M.K., Wessendorf R.L.,
RA Hines K.M., Bentolila S., Hanson M.R., Lu Y.;
RT "An organelle RNA recognition motif protein is required for photosynthetic
RT subunit psbF transcript editing.";
RL Plant Physiol. 173:2278-2293(2017).
CC -!- FUNCTION: Involved in C-to-U editing of chloroplastic RNA. Required for
CC the photosynthetic subunit psbF transcript editing in chloroplast.
CC {ECO:0000269|PubMed:28213559}.
CC -!- SUBUNIT: Interacts with MORF8/RIP1, MORF2/RIP2, MORF9/RIP9 and
CC VAR3/OZ1. {ECO:0000269|PubMed:28213559}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000269|PubMed:28213559}.
CC -!- DISRUPTION PHENOTYPE: Dwarf plants and pale green leaf phenotype.
CC {ECO:0000269|PubMed:28213559}.
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DR EMBL; AC012396; AAG30979.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE35472.1; -; Genomic_DNA.
DR EMBL; BT021981; AAY17418.1; -; mRNA.
DR EMBL; BT028910; ABI49457.1; -; mRNA.
DR PIR; A96762; A96762.
DR RefSeq; NP_177494.1; NM_106011.4.
DR AlphaFoldDB; Q9FX45; -.
DR SMR; Q9FX45; -.
DR STRING; 3702.AT1G73530.1; -.
DR iPTMnet; Q9FX45; -.
DR MetOSite; Q9FX45; -.
DR PaxDb; Q9FX45; -.
DR PRIDE; Q9FX45; -.
DR ProteomicsDB; 248908; -.
DR EnsemblPlants; AT1G73530.1; AT1G73530.1; AT1G73530.
DR GeneID; 843687; -.
DR Gramene; AT1G73530.1; AT1G73530.1; AT1G73530.
DR KEGG; ath:AT1G73530; -.
DR Araport; AT1G73530; -.
DR TAIR; locus:2206850; AT1G73530.
DR eggNOG; KOG0118; Eukaryota.
DR HOGENOM; CLU_1429890_0_0_1; -.
DR InParanoid; Q9FX45; -.
DR OMA; KAIQGMH; -.
DR OrthoDB; 1524134at2759; -.
DR PhylomeDB; Q9FX45; -.
DR PRO; PR:Q9FX45; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FX45; baseline and differential.
DR GO; GO:0009507; C:chloroplast; IDA:UniProtKB.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:1900871; P:chloroplast mRNA modification; IMP:UniProtKB.
DR GO; GO:0016554; P:cytidine to uridine editing; IMP:UniProtKB.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR003954; RRM_dom_euk.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00361; RRM_1; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR PROSITE; PS50102; RRM; 1.
PE 1: Evidence at protein level;
KW Chloroplast; mRNA processing; Plastid; Reference proteome; RNA-binding;
KW Transit peptide.
FT TRANSIT 1..44
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 45..181
FT /note="Organelle RRM domain-containing protein 6,
FT chloroplastic"
FT /id="PRO_0000439870"
FT DOMAIN 77..155
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT REGION 155..181
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 155..173
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 181 AA; 20063 MW; 78084682A66CA769 CRC64;
MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL
STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF GNLIHMNMVM DKVANRPKGF
AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT
W
