OTP51_ORYSJ
ID OTP51_ORYSJ Reviewed; 790 AA.
AC Q6ZHJ5; A0A0P0VNH6; Q0DYC7;
DT 24-JUN-2015, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Pentatricopeptide repeat-containing protein OTP51, chloroplastic {ECO:0000305};
DE AltName: Full=Protein ORGANELLE TRANSCRIPT PROCESSING 51 {ECO:0000303|PubMed:22353560};
DE Short=OsOTP51 {ECO:0000303|PubMed:22353560};
DE Flags: Precursor;
GN Name=OTP51 {ECO:0000303|PubMed:22353560};
GN OrderedLocusNames=Os02g0702000 {ECO:0000312|EMBL:BAF09761.2},
GN LOC_Os02g47360 {ECO:0000305};
GN ORFNames=OJ1218_D07.6 {ECO:0000312|EMBL:BAD07548.1},
GN OsJ_08060 {ECO:0000312|EMBL:EAZ24309.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=22353560; DOI=10.1111/j.1744-7909.2012.01094.x;
RA Ye J.W., Gong Z.Y., Chen C.G., Mi H.L., Chen G.Y.;
RT "A mutation of OSOTP 51 leads to impairment of photosystem I complex
RT assembly and serious photo-damage in rice.";
RL J. Integr. Plant Biol. 54:87-98(2012).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Promotes the splicing of group II introns in chloroplasts.
CC Required for the splicing of intron 2 of plastid ycf3 transcripts, a
CC factor required for the assembly of photosystem I (PSI). Involved in
CC the splicing of atpF, ndhA, petB and rps16 chloroplastic transcripts.
CC Required for the assembly of PSI. {ECO:0000269|PubMed:22353560}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC -!- DISRUPTION PHENOTYPE: Chlorophyll deficiency and seedling lethality
CC when grown under normal light or low light.
CC {ECO:0000269|PubMed:22353560}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
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DR EMBL; JN613018; AEX88471.1; -; Genomic_DNA.
DR EMBL; AP004052; BAD07548.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09761.2; -; Genomic_DNA.
DR EMBL; AP014958; BAS80476.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ24309.1; -; Genomic_DNA.
DR RefSeq; XP_015626611.1; XM_015771125.1.
DR AlphaFoldDB; Q6ZHJ5; -.
DR SMR; Q6ZHJ5; -.
DR STRING; 4530.OS02T0702000-00; -.
DR PaxDb; Q6ZHJ5; -.
DR PRIDE; Q6ZHJ5; -.
DR EnsemblPlants; Os02t0702000-01; Os02t0702000-01; Os02g0702000.
DR GeneID; 4330440; -.
DR Gramene; Os02t0702000-01; Os02t0702000-01; Os02g0702000.
DR KEGG; osa:4330440; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_017335_0_0_1; -.
DR InParanoid; Q6ZHJ5; -.
DR OMA; NAQRKWI; -.
DR OrthoDB; 1344243at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6ZHJ5; OS.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0004519; F:endonuclease activity; IEA:InterPro.
DR GO; GO:0000373; P:Group II intron splicing; IMP:UniProtKB.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IMP:UniProtKB.
DR GO; GO:0048564; P:photosystem I assembly; IMP:UniProtKB.
DR Gene3D; 1.25.40.10; -; 3.
DR Gene3D; 3.10.28.10; -; 2.
DR InterPro; IPR027434; Homing_endonucl.
DR InterPro; IPR004860; LAGLIDADG_2.
DR InterPro; IPR002885; Pentatricopeptide_repeat.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF03161; LAGLIDADG_2; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF55608; SSF55608; 1.
DR TIGRFAMs; TIGR00756; PPR; 4.
DR PROSITE; PS51375; PPR; 7.
PE 3: Inferred from homology;
KW Chloroplast; mRNA processing; mRNA splicing; Plastid; Reference proteome;
KW Repeat; Transit peptide.
FT TRANSIT 1..56
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 57..790
FT /note="Pentatricopeptide repeat-containing protein OTP51,
FT chloroplastic"
FT /evidence="ECO:0000255"
FT /id="PRO_0000433225"
FT REPEAT 182..216
FT /note="PPR 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 217..254
FT /note="PPR 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 256..296
FT /note="PPR 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 299..333
FT /note="PPR 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 334..368
FT /note="PPR 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 369..403
FT /note="PPR 6"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 404..438
FT /note="PPR 7"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 439..469
FT /note="PPR 8"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 473..507
FT /note="PPR 9"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REPEAT 509..543
FT /note="PPR 10"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00708"
FT REGION 762..790
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 772..790
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 790 AA; 90000 MW; 273072719E7CD62E CRC64;
MATTSPCAAP SPSLRCPLAL SHPFASPPPP PALRLAGPKL LPGRLAVSPP PGIPAVASAL
ESLILDLDDD EEDEDEETEF GLFQGEAWAA ADEREAVRSP ELVVPELEEL PEQWRRSRIA
WLCKELPAYK HSTFTRILNA QRKWITQDDA TYVAVHCLRI RNNDAAFRVY SWMVRQHWFR
FNFALATRVA DCLGRDGKVE KCREVFEAMV KQGRVPAEST FHILIVAYLS VPKGRCLEEA
CTIYNQMIQM GGYKPRLSLH NSLFRALVSK TGGTAKYNLK QAEFVYHNVV TTNLDVHKDV
YAGLIWLHSY QDVIDRERII ALRKEMKQAG FDEGIDVLVS VMRAFSKEGN VAETEATWHN
ILQSGSDLPV QAYVCRMEAY ARTGEPMKSL DMFKEMKDKN IPPNVASYHK IIEIMTKALE
VDIVEQLMNE FIESDMKHLM PAFLDLMYMY MDLDMHEKLE LTFLKCIARC RPNRILYTIY
LESLVKVGNI EKAEEVFGEM HNNGMIGTNT KSCNIMLRGY LSAEDYQKAE KVYDMMSKKK
YDVQADSLEK LQSGLLLNKK VIKPKTVSMK LDQEQREILI GLLLGGTRME SYAQRGVHIV
HFQFQEDSNA HSVLRVHIHE RFFEWLSSAS RSFDDGSKIP YQFSTIPHQH FSFFVDQFFL
KGQPVLPKLI HRWLTPRVLA YWFMFGGSKL PSGDIVLKLS GGNSEGVERI VNSLHTQSLT
SKVKRKGRFF WIGFQGSNAE SFWRIIEPHV LNNFASLVTQ EGSSIGSDGT QDTDTDSDDD
MQMSDTERDE
