P3F2B_XENLA
ID P3F2B_XENLA Reviewed; 385 AA.
AC P70030; B1H1P3; Q6IP58;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1997, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=POU domain, class 3, transcription factor 2-B;
DE AltName: Full=Transcription factor POU3-B;
DE Short=XlPOU3B;
GN Name=pou3f2-b; Synonyms=pou3b, pou3f2;
OS Xenopus laevis (African clawed frog).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus.
OX NCBI_TaxID=8355;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], TISSUE SPECIFICITY, AND DEVELOPMENTAL
RP STAGE.
RX PubMed=8887320; DOI=10.1016/s0925-4773(96)00563-1;
RA Baltzinger M., Relaix F., Remy P.;
RT "Transcription of XLPOU3, a brain-specific gene, during Xenopus laevis
RT early embryogenesis.";
RL Mech. Dev. 58:103-114(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Gastrula, and Tail bud;
RG NIH - Xenopus Gene Collection (XGC) project;
RL Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Transcription factor that may be implicated in patterning of
CC the central nervous system during early development. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus.
CC -!- TISSUE SPECIFICITY: Expressed in the developing brain and spinal cord.
CC Also found in a restricted region of the auditory vesicle during
CC development. In the adult, expression is restricted to the brain.
CC {ECO:0000269|PubMed:8887320}.
CC -!- DEVELOPMENTAL STAGE: First expressed at the neurula stage.
CC {ECO:0000269|PubMed:8887320}.
CC -!- SIMILARITY: Belongs to the POU transcription factor family. Class-3
CC subfamily. {ECO:0000305}.
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DR EMBL; X96423; CAA65283.1; -; Genomic_DNA.
DR EMBL; BC072060; AAH72060.1; -; mRNA.
DR EMBL; BC160684; AAI60684.1; -; mRNA.
DR RefSeq; NP_001090220.1; NM_001096751.1.
DR AlphaFoldDB; P70030; -.
DR SMR; P70030; -.
DR DNASU; 779122; -.
DR GeneID; 779122; -.
DR KEGG; xla:779122; -.
DR CTD; 779122; -.
DR Xenbase; XB-GENE-483178; pou3f2.L.
DR OMA; QHHGGEH; -.
DR OrthoDB; 752252at2759; -.
DR Proteomes; UP000186698; Chromosome 5L.
DR Bgee; 779122; Expressed in brain and 7 other tissues.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0007420; P:brain development; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 1.10.260.40; -; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR013847; POU.
DR InterPro; IPR000327; POU_dom.
DR InterPro; IPR016362; TF_POU_3.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF00157; Pou; 1.
DR PIRSF; PIRSF002629; Transcription_factor_POU; 1.
DR PRINTS; PR00028; POUDOMAIN.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00352; POU; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR SUPFAM; SSF47413; SSF47413; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS00035; POU_1; 1.
DR PROSITE; PS00465; POU_2; 1.
DR PROSITE; PS51179; POU_3; 1.
PE 2: Evidence at transcript level;
KW Developmental protein; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..385
FT /note="POU domain, class 3, transcription factor 2-B"
FT /id="PRO_0000100726"
FT DOMAIN 204..278
FT /note="POU-specific"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00530"
FT DNA_BIND 296..355
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 106..136
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 149..209
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 351..385
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 119..136
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 162..178
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 179..195
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 385 AA; 41985 MW; 59001F5CCC0B2F3D CRC64;
MATTASNHYN LLGSGSSIVH ADPGGMQQAQ SYRDAQTLVQ SDYTLQSNGH PLSHAHQWIT
ALSHGDGAPW ATSPLGQQDI KPTVQSSRDE LHGSGTLQHQ SRAPHLVHPA HGNHHGPGAW
RSTGSTHLSS MASSNGQGLL YSQPSFTVNG MINPGSGQGM HHHGLRDSHD DHHGDHGHQQ
PSQTQQQQQQ HSQLQGGHHD HSDEDTPTSD DLEQFAKQFK QRRIKLGFTQ ADVGLALGTL
YGNVFSQTTI CRFEALQLSF KNMCKLKPLL NKWLEEADSS SGSPTSIDKI AAQGRKRKKR
TSIEVSVKGA LESHFLKCPK PAAQEITSLA DSLQLEKEVV RVWFCNRRQK EKRMTPPGGT
IPGAEDVYGA SRDTPPHLGV QTSVQ