PAP12_ARATH
ID PAP12_ARATH Reviewed; 409 AA.
AC Q8LAP6; Q9C686; Q9C687;
DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 25-MAY-2022, entry version 93.
DE RecName: Full=Probable plastid-lipid-associated protein 12, chloroplastic;
DE AltName: Full=Fibrillin-10;
DE Flags: Precursor;
GN Name=PAP12; Synonyms=FBN10, FIB10; OrderedLocusNames=At1g51110/At1g51115;
GN ORFNames=F23H24.16/F23H24.17;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=21571574; DOI=10.1016/j.tplants.2011.03.014;
RA Singh D.K., McNellis T.W.;
RT "Fibrillin protein function: the tip of the iceberg?";
RL Trends Plant Sci. 16:432-441(2011).
RN [7]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RC STRAIN=cv. Columbia;
RX PubMed=22274653; DOI=10.1104/pp.111.193144;
RA Lundquist P.K., Poliakov A., Bhuiyan N.H., Zybailov B., Sun Q.,
RA van Wijk K.J.;
RT "The functional network of the Arabidopsis plastoglobule proteome based on
RT quantitative proteomics and genome-wide coexpression analysis.";
RL Plant Physiol. 158:1172-1192(2012).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid
CC {ECO:0000269|PubMed:22274653}. Note=Located in thylakoid as a
CC peripheral protein at the stromal side. {ECO:0000269|PubMed:22274653}.
CC -!- SIMILARITY: Belongs to the PAP/fibrillin family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG50539.1; Type=Erroneous gene model prediction; Note=Was originally thought to correspond to two different genes At1g51110 and At1g51115.; Evidence={ECO:0000305};
CC Sequence=AAG50542.1; Type=Erroneous gene model prediction; Note=Was originally thought to correspond to two different genes At1g51110 and At1g51115.; Evidence={ECO:0000305};
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DR EMBL; AC079828; AAG50539.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC079828; AAG50542.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE32623.1; -; Genomic_DNA.
DR EMBL; AK118545; BAC43147.1; -; mRNA.
DR EMBL; BT005347; AAO63411.1; -; mRNA.
DR EMBL; AY087688; AAM65225.1; -; mRNA.
DR PIR; D96548; D96548.
DR PIR; E96548; E96548.
DR RefSeq; NP_175522.2; NM_103989.5.
DR AlphaFoldDB; Q8LAP6; -.
DR STRING; 3702.AT1G51110.1; -.
DR PaxDb; Q8LAP6; -.
DR PRIDE; Q8LAP6; -.
DR ProteomicsDB; 236838; -.
DR EnsemblPlants; AT1G51110.1; AT1G51110.1; AT1G51110.
DR GeneID; 841534; -.
DR Gramene; AT1G51110.1; AT1G51110.1; AT1G51110.
DR KEGG; ath:AT1G51110; -.
DR Araport; AT1G51110; -.
DR TAIR; locus:2026052; AT1G51110.
DR eggNOG; ENOG502QUCQ; Eukaryota.
DR HOGENOM; CLU_054473_1_0_1; -.
DR OMA; NINQHKL; -.
DR OrthoDB; 959475at2759; -.
DR PRO; PR:Q8LAP6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8LAP6; baseline and differential.
DR Genevisible; Q8LAP6; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR InterPro; IPR039633; PAP.
DR InterPro; IPR006843; PAP/fibrillin_dom.
DR PANTHER; PTHR31906; PTHR31906; 1.
DR Pfam; PF04755; PAP_fibrillin; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Plastid; Reference proteome; Thylakoid; Transit peptide.
FT TRANSIT 1..55
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 56..409
FT /note="Probable plastid-lipid-associated protein 12,
FT chloroplastic"
FT /id="PRO_0000290214"
SQ SEQUENCE 409 AA; 45765 MW; C874AEB77EEC1D41 CRC64;
MVAVRFYAVE MSLPCLCPCP SSPISLSLCS PRFNLLNTTS RRLGLSRNCR TLRISCSSSS
TVTDQTQQSS FNDAELKLID ALIGIQGRGK SASPKQLNDV ESAVKVLEGL EGIQNPTDSD
LIEGRWRLMF TTRPGTASPI QRTFTGVDVF TVFQDVYLKA TNDPRVSNIV KFSDFIGELK
VEAVASIKDG KRVLFRFDRA AFDLKFLPFK VPYPVPFRLL GDEAKGWLDT TYLSPSGNLR
ISRGNKGTTF VLQKETVPRQ KLLATISQDK GVAEAIDEFL ASNSNSAEDN YELLEGSWQM
IWSSQMYTDS WIENAANGLM GRQIIEKDGR IKFEVNIIPA FRFSMKGKFI KSESSTYDLK
MDDAAIIGGA FGYPVDITNN IELKILYTDE KMRISRGFDN IIFVHIREI
