PAP13_ARATH
ID PAP13_ARATH Reviewed; 299 AA.
AC Q8S9M1; O48521; Q84X37; Q84X38; Q84X39; Q8GY49;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 15-MAY-2007, sequence version 2.
DT 25-MAY-2022, entry version 100.
DE RecName: Full=Probable plastid-lipid-associated protein 13, chloroplastic;
DE AltName: Full=Fibrillin-7b;
DE Short=AtPGL30;
DE Flags: Precursor;
GN Name=PAP13; Synonyms=FBN7b, FIB7b; OrderedLocusNames=At2g42130;
GN ORFNames=T24P15.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 3; 4 AND 5).
RC STRAIN=cv. Columbia;
RX PubMed=16244158; DOI=10.1104/pp.105.063479;
RA Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L.,
RA Ayele M., Haas B.J., Wu H.C., Town C.D.;
RT "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2
RT reveals numerous transcript variants.";
RL Plant Physiol. 139:1323-1337(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RC STRAIN=cv. Columbia;
RX PubMed=16461379; DOI=10.1104/pp.105.076083;
RA Ytterberg A.J., Peltier J.-B., van Wijk K.J.;
RT "Protein profiling of plastoglobules in chloroplasts and chromoplasts. A
RT surprising site for differential accumulation of metabolic enzymes.";
RL Plant Physiol. 140:984-997(2006).
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=21571574; DOI=10.1016/j.tplants.2011.03.014;
RA Singh D.K., McNellis T.W.;
RT "Fibrillin protein function: the tip of the iceberg?";
RL Trends Plant Sci. 16:432-441(2011).
RN [9]
RP ACETYLATION [LARGE SCALE ANALYSIS] AT VAL-2 (ISOFORMS 3; 4 AND 5), CLEAVAGE
RP OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS] (ISOFORM 3), CLEAVAGE OF
RP INITIATOR METHIONINE [LARGE SCALE ANALYSIS] (ISOFORM 4), CLEAVAGE OF
RP INITIATOR METHIONINE [LARGE SCALE ANALYSIS] (ISOFORM 5), AND IDENTIFICATION
RP BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=22223895; DOI=10.1074/mcp.m111.015131;
RA Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T.,
RA Giglione C.;
RT "Comparative large-scale characterisation of plant vs. mammal proteins
RT reveals similar and idiosyncratic N-alpha acetylation features.";
RL Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
RN [10]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RC STRAIN=cv. Columbia;
RX PubMed=22274653; DOI=10.1104/pp.111.193144;
RA Lundquist P.K., Poliakov A., Bhuiyan N.H., Zybailov B., Sun Q.,
RA van Wijk K.J.;
RT "The functional network of the Arabidopsis plastoglobule proteome based on
RT quantitative proteomics and genome-wide coexpression analysis.";
RL Plant Physiol. 158:1172-1192(2012).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast, plastoglobule
CC {ECO:0000269|PubMed:16461379, ECO:0000269|PubMed:22274653}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=6;
CC Name=1;
CC IsoId=Q8S9M1-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q8S9M1-2; Sequence=VSP_025078, VSP_025079;
CC Name=3;
CC IsoId=Q8S9M1-3; Sequence=VSP_025074;
CC Name=4;
CC IsoId=Q8S9M1-4; Sequence=VSP_025074, VSP_025075;
CC Name=5;
CC IsoId=Q8S9M1-5; Sequence=VSP_025074, VSP_025076, VSP_025077;
CC Name=6;
CC IsoId=Q8S9M1-6; Sequence=VSP_025073;
CC -!- SIMILARITY: Belongs to the PAP/fibrillin family. {ECO:0000305}.
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DR EMBL; AC002561; AAB88638.2; -; Genomic_DNA.
DR EMBL; CP002685; AEC10074.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10075.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10076.1; -; Genomic_DNA.
DR EMBL; AK117864; BAC42505.1; -; mRNA.
DR EMBL; AY074656; AAL69472.1; -; mRNA.
DR EMBL; AY219066; AAO37153.1; -; mRNA.
DR EMBL; AY219067; AAO37154.1; -; mRNA.
DR EMBL; AY219068; AAO37155.1; -; mRNA.
DR EMBL; AY954828; AAX55154.1; -; mRNA.
DR PIR; T00923; T00923.
DR RefSeq; NP_850362.1; NM_180031.2. [Q8S9M1-2]
DR RefSeq; NP_973666.1; NM_201937.1. [Q8S9M1-4]
DR RefSeq; NP_973667.2; NM_201938.3. [Q8S9M1-1]
DR AlphaFoldDB; Q8S9M1; -.
DR STRING; 3702.AT2G42130.4; -.
DR iPTMnet; Q8S9M1; -.
DR PaxDb; Q8S9M1; -.
DR PRIDE; Q8S9M1; -.
DR EnsemblPlants; AT2G42130.1; AT2G42130.1; AT2G42130. [Q8S9M1-2]
DR EnsemblPlants; AT2G42130.3; AT2G42130.3; AT2G42130. [Q8S9M1-4]
DR EnsemblPlants; AT2G42130.4; AT2G42130.4; AT2G42130. [Q8S9M1-1]
DR GeneID; 818813; -.
DR Gramene; AT2G42130.1; AT2G42130.1; AT2G42130. [Q8S9M1-2]
DR Gramene; AT2G42130.3; AT2G42130.3; AT2G42130. [Q8S9M1-4]
DR Gramene; AT2G42130.4; AT2G42130.4; AT2G42130. [Q8S9M1-1]
DR KEGG; ath:AT2G42130; -.
DR Araport; AT2G42130; -.
DR TAIR; locus:2060020; AT2G42130.
DR eggNOG; ENOG502S160; Eukaryota.
DR OMA; ERMFMIS; -.
DR PhylomeDB; Q8S9M1; -.
DR PRO; PR:Q8S9M1; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8S9M1; baseline and differential.
DR Genevisible; Q8S9M1; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0010287; C:plastoglobule; HDA:TAIR.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR InterPro; IPR039633; PAP.
DR InterPro; IPR006843; PAP/fibrillin_dom.
DR PANTHER; PTHR31906; PTHR31906; 1.
DR Pfam; PF04755; PAP_fibrillin; 1.
PE 1: Evidence at protein level;
KW Acetylation; Alternative splicing; Chloroplast; Plastid;
KW Reference proteome; Transit peptide.
FT TRANSIT 1..48
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 49..299
FT /note="Probable plastid-lipid-associated protein 13,
FT chloroplastic"
FT /id="PRO_0000286536"
FT VAR_SEQ 1..158
FT /note="Missing (in isoform 6)"
FT /evidence="ECO:0000303|PubMed:11910074"
FT /id="VSP_025073"
FT VAR_SEQ 1..49
FT /note="Missing (in isoform 3, isoform 4 and isoform 5)"
FT /evidence="ECO:0000303|PubMed:16244158, ECO:0000303|Ref.6"
FT /id="VSP_025074"
FT VAR_SEQ 78
FT /note="A -> AEQSSVCLELSNYFCPEAIYVQ (in isoform 4)"
FT /evidence="ECO:0000303|PubMed:16244158"
FT /id="VSP_025075"
FT VAR_SEQ 148..155
FT /note="RFPSTLAN -> SVLIIFSS (in isoform 5)"
FT /evidence="ECO:0000303|PubMed:16244158"
FT /id="VSP_025076"
FT VAR_SEQ 156..299
FT /note="Missing (in isoform 5)"
FT /evidence="ECO:0000303|PubMed:16244158"
FT /id="VSP_025077"
FT VAR_SEQ 253..270
FT /note="GSFERFFMISYLDEEILI -> KLLYPFFIHLTIFRSNLH (in isoform
FT 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_025078"
FT VAR_SEQ 271..299
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_025079"
FT INIT_MET Q8S9M1-3:1
FT /note="Removed"
FT /evidence="ECO:0007744|PubMed:22223895"
FT MOD_RES Q8S9M1-3:2
FT /note="N-acetylvaline"
FT /evidence="ECO:0007744|PubMed:22223895"
FT INIT_MET Q8S9M1-4:1
FT /note="Removed"
FT /evidence="ECO:0007744|PubMed:22223895"
FT MOD_RES Q8S9M1-4:2
FT /note="N-acetylvaline"
FT /evidence="ECO:0007744|PubMed:22223895"
FT INIT_MET Q8S9M1-5:1
FT /note="Removed"
FT /evidence="ECO:0007744|PubMed:22223895"
FT MOD_RES Q8S9M1-5:2
FT /note="N-acetylvaline"
FT /evidence="ECO:0007744|PubMed:22223895"
SQ SEQUENCE 299 AA; 32986 MW; E73AC3466B2F1A3D CRC64;
MALIHGSVPG TSAVRLVFST SASPSRFCLN VPVVKQGWKN SCRRRVLRAM VQETVQGSPL
VYAREMERLS AKESLLLALK DAGGFEALVT GKTTNMQRID VNERITSLER LNPTPRPTTS
PCFEGRWNFE WFGSGSPGLL AARVIFERFP STLANLSRME ILIKDANAKA TANIKLLNSI
ESKIILSSKL TVEGPLRLKE EYVEGMLETP TVIEEAVPEQ LKSALGQAAT TLQQLPALIK
DTLASGLRIP LSGSFERFFM ISYLDEEILI VRDTEGVPEV LTRIETPSST VVETIEYDS
