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PAP3_ARATH
ID   PAP3_ARATH              Reviewed;         376 AA.
AC   O82291; Q94B19;
DT   26-APR-2005, integrated into UniProtKB/Swiss-Prot.
DT   01-NOV-1998, sequence version 1.
DT   25-MAY-2022, entry version 112.
DE   RecName: Full=Probable plastid-lipid-associated protein 3, chloroplastic;
DE            Short=AtPap3;
DE   AltName: Full=Fibrillin-2;
DE   AltName: Full=Plastoglobulin 40;
DE            Short=AtPGL40;
DE   Flags: Precursor;
GN   Name=PAP3; Synonyms=FBN2, FIB2, PGL40; OrderedLocusNames=At2g35490;
GN   ORFNames=T32F12.13;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10617197; DOI=10.1038/45471;
RA   Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA   Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA   Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA   Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA   Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA   Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA   Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT   "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL   Nature 402:761-768(1999).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA   Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA   Feldmann K.A.;
RT   "Full-length cDNA from Arabidopsis thaliana.";
RL   Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP   ANALYSIS].
RC   STRAIN=cv. Columbia;
RX   PubMed=16461379; DOI=10.1104/pp.105.076083;
RA   Ytterberg A.J., Peltier J.-B., van Wijk K.J.;
RT   "Protein profiling of plastoglobules in chloroplasts and chromoplasts. A
RT   surprising site for differential accumulation of metabolic enzymes.";
RL   Plant Physiol. 140:984-997(2006).
RN   [6]
RP   FUNCTION.
RX   PubMed=19906042; DOI=10.1111/j.1365-313x.2009.04067.x;
RA   Youssef A., Laizet Y., Block M.A., Marechal E., Alcaraz J.P., Larson T.R.,
RA   Pontier D., Gaffe J., Kuntz M.;
RT   "Plant lipid-associated fibrillin proteins condition jasmonate production
RT   under photosynthetic stress.";
RL   Plant J. 61:436-445(2010).
RN   [7]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=21571574; DOI=10.1016/j.tplants.2011.03.014;
RA   Singh D.K., McNellis T.W.;
RT   "Fibrillin protein function: the tip of the iceberg?";
RL   Trends Plant Sci. 16:432-441(2011).
RN   [8]
RP   IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP   ANALYSIS].
RC   STRAIN=cv. Columbia;
RX   PubMed=22274653; DOI=10.1104/pp.111.193144;
RA   Lundquist P.K., Poliakov A., Bhuiyan N.H., Zybailov B., Sun Q.,
RA   van Wijk K.J.;
RT   "The functional network of the Arabidopsis plastoglobule proteome based on
RT   quantitative proteomics and genome-wide coexpression analysis.";
RL   Plant Physiol. 158:1172-1192(2012).
CC   -!- FUNCTION: Probably involved in light/cold stress-related jasmonate (JA)
CC       biosynthesis. {ECO:0000269|PubMed:19906042}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast, plastoglobule
CC       {ECO:0000269|PubMed:16461379, ECO:0000269|PubMed:22274653}.
CC   -!- MISCELLANEOUS: Simultaneous down-regulation of PAP1, PAP2 and PAP3
CC       leads to impaired long-term acclimation to environmental constraint,
CC       namely photooxidative stress imposed by high light combined with cold.
CC       {ECO:0000305|PubMed:19906042}.
CC   -!- SIMILARITY: Belongs to the PAP/fibrillin family. {ECO:0000305}.
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DR   EMBL; AC005314; AAC36172.1; -; Genomic_DNA.
DR   EMBL; CP002685; AEC09113.1; -; Genomic_DNA.
DR   EMBL; AY042905; AAK68845.1; -; mRNA.
DR   EMBL; AY081449; AAM10011.1; -; mRNA.
DR   EMBL; AY087815; AAM65369.1; -; mRNA.
DR   PIR; C84769; C84769.
DR   RefSeq; NP_181092.1; NM_129101.3.
DR   AlphaFoldDB; O82291; -.
DR   STRING; 3702.AT2G35490.1; -.
DR   iPTMnet; O82291; -.
DR   PaxDb; O82291; -.
DR   PRIDE; O82291; -.
DR   ProteomicsDB; 236270; -.
DR   EnsemblPlants; AT2G35490.1; AT2G35490.1; AT2G35490.
DR   GeneID; 818114; -.
DR   Gramene; AT2G35490.1; AT2G35490.1; AT2G35490.
DR   KEGG; ath:AT2G35490; -.
DR   Araport; AT2G35490; -.
DR   TAIR; locus:2062497; AT2G35490.
DR   eggNOG; ENOG502QQMX; Eukaryota.
DR   HOGENOM; CLU_045041_0_2_1; -.
DR   InParanoid; O82291; -.
DR   OMA; PDEWGDR; -.
DR   OrthoDB; 1037321at2759; -.
DR   PhylomeDB; O82291; -.
DR   PRO; PR:O82291; -.
DR   Proteomes; UP000006548; Chromosome 2.
DR   ExpressionAtlas; O82291; baseline and differential.
DR   Genevisible; O82291; AT.
DR   GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR   GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR   GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR   GO; GO:0005783; C:endoplasmic reticulum; HDA:TAIR.
DR   GO; GO:0009536; C:plastid; HDA:TAIR.
DR   GO; GO:0010287; C:plastoglobule; HDA:TAIR.
DR   GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR   InterPro; IPR039633; PAP.
DR   InterPro; IPR006843; PAP/fibrillin_dom.
DR   PANTHER; PTHR31906; PTHR31906; 1.
DR   Pfam; PF04755; PAP_fibrillin; 1.
PE   1: Evidence at protein level;
KW   Chloroplast; Plastid; Reference proteome; Transit peptide.
FT   TRANSIT         1..53
FT                   /note="Chloroplast"
FT                   /evidence="ECO:0000255"
FT   CHAIN           54..376
FT                   /note="Probable plastid-lipid-associated protein 3,
FT                   chloroplastic"
FT                   /id="PRO_0000023210"
FT   REGION          54..146
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        103..130
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CONFLICT        209
FT                   /note="Y -> C (in Ref. 3; AAK68845/AAM10011)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   376 AA;  40505 MW;  DA958852D317F555 CRC64;
     MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES
     ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE WGEKSGPELE ESGTRFMESD
     PPRNEDEWGG EIGGETEADA GNGSAVSDPT WELKRCLADS VYGTELGFKA GSEVRAEVLE
     LVNQLEALNP TPAPLENPEL LDGNWVLLYT AFSELIPLLA AGSTPLLKVK SISQSIDTNN
     LIIDNSTTLS SPFADFSFSA TASFEVRSPS RIEVSFKEGT LKPPVIKSSV DLPESVGVFG
     QQISLSLLKQ SLNPLQDVAA NISRALSGQP PLKLPFPGNR GSSWLLTTYL DKDLRISRGD
     GGLFVLAREG SSLLEL
 
 
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