PAP4_ARATH
ID PAP4_ARATH Reviewed; 242 AA.
AC Q9LU85; Q8W4A9;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 112.
DE RecName: Full=Probable plastid-lipid-associated protein 4, chloroplastic;
DE AltName: Full=Fibrillin-3a;
DE AltName: Full=Plastoglobulin 25;
DE Short=AtPGL25;
DE Flags: Precursor;
GN Name=PAP4; Synonyms=FBN3a, FIB3a, PGL25; OrderedLocusNames=At3g26070;
GN ORFNames=MPE11.24;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=21571574; DOI=10.1016/j.tplants.2011.03.014;
RA Singh D.K., McNellis T.W.;
RT "Fibrillin protein function: the tip of the iceberg?";
RL Trends Plant Sci. 16:432-441(2011).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RC STRAIN=cv. Columbia;
RX PubMed=22274653; DOI=10.1104/pp.111.193144;
RA Lundquist P.K., Poliakov A., Bhuiyan N.H., Zybailov B., Sun Q.,
RA van Wijk K.J.;
RT "The functional network of the Arabidopsis plastoglobule proteome based on
RT quantitative proteomics and genome-wide coexpression analysis.";
RL Plant Physiol. 158:1172-1192(2012).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid
CC {ECO:0000269|PubMed:22274653}. Note=Located in thylakoid as a
CC peripheral protein at the stromal side. {ECO:0000269|PubMed:22274653}.
CC -!- SIMILARITY: Belongs to the PAP/fibrillin family. {ECO:0000305}.
CC -!- CAUTION: Was named previously At3g26090. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAL32767.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AB023041; BAB01070.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77111.1; -; Genomic_DNA.
DR EMBL; AY081657; AAM10219.1; -; mRNA.
DR EMBL; AY065118; AAL38294.1; -; mRNA.
DR EMBL; AY062689; AAL32767.1; ALT_INIT; mRNA.
DR EMBL; AY093379; AAM13378.1; -; mRNA.
DR RefSeq; NP_189236.3; NM_113511.6.
DR AlphaFoldDB; Q9LU85; -.
DR STRING; 3702.AT3G26070.1; -.
DR iPTMnet; Q9LU85; -.
DR PaxDb; Q9LU85; -.
DR PRIDE; Q9LU85; -.
DR ProteomicsDB; 236271; -.
DR EnsemblPlants; AT3G26070.1; AT3G26070.1; AT3G26070.
DR GeneID; 822204; -.
DR Gramene; AT3G26070.1; AT3G26070.1; AT3G26070.
DR KEGG; ath:AT3G26070; -.
DR Araport; AT3G26070; -.
DR TAIR; locus:2092150; AT3G26070.
DR eggNOG; ENOG502QSMF; Eukaryota.
DR HOGENOM; CLU_069245_0_0_1; -.
DR OMA; NWRLLYT; -.
DR OrthoDB; 1481967at2759; -.
DR PhylomeDB; Q9LU85; -.
DR PRO; PR:Q9LU85; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LU85; baseline and differential.
DR Genevisible; Q9LU85; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0010287; C:plastoglobule; HDA:TAIR.
DR InterPro; IPR039633; PAP.
DR InterPro; IPR006843; PAP/fibrillin_dom.
DR PANTHER; PTHR31906; PTHR31906; 1.
DR Pfam; PF04755; PAP_fibrillin; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Coiled coil; Plastid; Reference proteome; Thylakoid;
KW Transit peptide.
FT TRANSIT 1..50
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 51..242
FT /note="Probable plastid-lipid-associated protein 4,
FT chloroplastic"
FT /id="PRO_0000286533"
FT COILED 63..87
FT /evidence="ECO:0000255"
SQ SEQUENCE 242 AA; 27163 MW; 0DF504F3C5FBF565 CRC64;
MALPSCLKTG ALMSPATGFN FSGSLMKSDS GFAVPTKLQS TRKGDRERLR VQAIFSFPPA
FLTRNGRAEK QKQLKQELLE AIEPLERGAT ASPDDQLRID QLARKVEAVN PTKEPLKSDL
VNGKWELIYT TSASILQAKK PRFLRSITNY QSINVDTLKV QNMETWPFYN SVTGDIKPLN
SKKVAVKLQV FKILGFIPIK APDSARGELE ITYVDEELRL SRGDKGNLFI LKMFDPTYRI
PL
