PARC_RHIME
ID PARC_RHIME Reviewed; 758 AA.
AC Q59749;
DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT 30-MAY-2000, sequence version 2.
DT 03-AUG-2022, entry version 137.
DE RecName: Full=DNA topoisomerase 4 subunit A {ECO:0000255|HAMAP-Rule:MF_00936};
DE EC=5.6.2.2 {ECO:0000255|HAMAP-Rule:MF_00936};
DE AltName: Full=Topoisomerase IV subunit A {ECO:0000255|HAMAP-Rule:MF_00936};
GN Name=parC {ECO:0000255|HAMAP-Rule:MF_00936}; OrderedLocusNames=R01199;
GN ORFNames=SMc01761;
OS Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium
OS meliloti).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX NCBI_TaxID=266834;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=1021;
RX PubMed=11481430; DOI=10.1073/pnas.161294398;
RA Capela D., Barloy-Hubler F., Gouzy J., Bothe G., Ampe F., Batut J.,
RA Boistard P., Becker A., Boutry M., Cadieu E., Dreano S., Gloux S.,
RA Godrie T., Goffeau A., Kahn D., Kiss E., Lelaure V., Masuy D., Pohl T.,
RA Portetelle D., Puehler A., Purnelle B., Ramsperger U., Renard C.,
RA Thebault P., Vandenbol M., Weidner S., Galibert F.;
RT "Analysis of the chromosome sequence of the legume symbiont Sinorhizobium
RT meliloti strain 1021.";
RL Proc. Natl. Acad. Sci. U.S.A. 98:9877-9882(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=1021;
RX PubMed=11474104; DOI=10.1126/science.1060966;
RA Galibert F., Finan T.M., Long S.R., Puehler A., Abola P., Ampe F.,
RA Barloy-Hubler F., Barnett M.J., Becker A., Boistard P., Bothe G.,
RA Boutry M., Bowser L., Buhrmester J., Cadieu E., Capela D., Chain P.,
RA Cowie A., Davis R.W., Dreano S., Federspiel N.A., Fisher R.F., Gloux S.,
RA Godrie T., Goffeau A., Golding B., Gouzy J., Gurjal M., Hernandez-Lucas I.,
RA Hong A., Huizar L., Hyman R.W., Jones T., Kahn D., Kahn M.L., Kalman S.,
RA Keating D.H., Kiss E., Komp C., Lelaure V., Masuy D., Palm C., Peck M.C.,
RA Pohl T.M., Portetelle D., Purnelle B., Ramsperger U., Surzycki R.,
RA Thebault P., Vandenbol M., Vorhoelter F.J., Weidner S., Wells D.H.,
RA Wong K., Yeh K.-C., Batut J.;
RT "The composite genome of the legume symbiont Sinorhizobium meliloti.";
RL Science 293:668-672(2001).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 45-192.
RC STRAIN=RCR2011 / SU47;
RA Rosanas A., Barb J., Gibert I.;
RL Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Topoisomerase IV is essential for chromosome segregation. It
CC relaxes supercoiled DNA. Performs the decatenation events required
CC during the replication of a circular DNA molecule. {ECO:0000255|HAMAP-
CC Rule:MF_00936}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP-dependent breakage, passage and rejoining of double-
CC stranded DNA.; EC=5.6.2.2; Evidence={ECO:0000255|HAMAP-
CC Rule:MF_00936};
CC -!- SUBUNIT: Heterotetramer composed of ParC and ParE. {ECO:0000255|HAMAP-
CC Rule:MF_00936}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000255|HAMAP-Rule:MF_00936};
CC Peripheral membrane protein {ECO:0000255|HAMAP-Rule:MF_00936}.
CC -!- SIMILARITY: Belongs to the type II topoisomerase GyrA/ParC subunit
CC family. ParC type 1 subfamily. {ECO:0000255|HAMAP-Rule:MF_00936}.
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DR EMBL; AL591688; CAC45778.1; -; Genomic_DNA.
DR EMBL; X95674; CAA64977.1; -; Genomic_DNA.
DR RefSeq; NP_385305.1; NC_003047.1.
DR RefSeq; WP_003529331.1; NC_003047.1.
DR AlphaFoldDB; Q59749; -.
DR SMR; Q59749; -.
DR STRING; 266834.SMc01761; -.
DR PRIDE; Q59749; -.
DR EnsemblBacteria; CAC45778; CAC45778; SMc01761.
DR GeneID; 61602657; -.
DR KEGG; sme:SMc01761; -.
DR PATRIC; fig|266834.11.peg.2610; -.
DR eggNOG; COG0188; Bacteria.
DR HOGENOM; CLU_002977_4_1_5; -.
DR OMA; PRSNRID; -.
DR Proteomes; UP000001976; Chromosome.
DR GO; GO:0005694; C:chromosome; IEA:InterPro.
DR GO; GO:0019897; C:extrinsic component of plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003918; F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity; IEA:UniProtKB-UniRule.
DR GO; GO:0007059; P:chromosome segregation; IEA:UniProtKB-UniRule.
DR GO; GO:0006265; P:DNA topological change; IEA:UniProtKB-UniRule.
DR CDD; cd00187; TOP4c; 1.
DR Gene3D; 1.10.268.10; -; 1.
DR Gene3D; 2.120.10.90; -; 1.
DR Gene3D; 3.90.199.10; -; 1.
DR HAMAP; MF_00936; ParC_type1; 1.
DR InterPro; IPR006691; GyrA/parC_rep.
DR InterPro; IPR035516; Gyrase/topoIV_suA_C.
DR InterPro; IPR013760; Topo_IIA-like_dom_sf.
DR InterPro; IPR013758; Topo_IIA_A/C_ab.
DR InterPro; IPR013757; Topo_IIA_A_a_sf.
DR InterPro; IPR002205; Topo_IIA_dom_A.
DR InterPro; IPR005742; TopoIV_A_Gneg.
DR Pfam; PF03989; DNA_gyraseA_C; 3.
DR Pfam; PF00521; DNA_topoisoIV; 1.
DR SMART; SM00434; TOP4c; 1.
DR SUPFAM; SSF101904; SSF101904; 1.
DR SUPFAM; SSF56719; SSF56719; 1.
PE 3: Inferred from homology;
KW Cell membrane; DNA-binding; Isomerase; Membrane; Reference proteome;
KW Topoisomerase.
FT CHAIN 1..758
FT /note="DNA topoisomerase 4 subunit A"
FT /id="PRO_0000145404"
FT ACT_SITE 129
FT /note="O-(5'-phospho-DNA)-tyrosine intermediate"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00936"
FT SITE 49
FT /note="Interaction with DNA"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00936"
FT SITE 85
FT /note="Interaction with DNA"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00936"
FT SITE 87
FT /note="Interaction with DNA"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00936"
FT SITE 128
FT /note="Transition state stabilizer"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00936"
FT CONFLICT 145..147
FT /note="IDQ -> STL (in Ref. 3; CAA64977)"
FT /evidence="ECO:0000305"
FT CONFLICT 188
FT /note="S -> N (in Ref. 3; CAA64977)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 758 AA; 83754 MW; D2AF7AF65EFA1329 CRC64;
MGQSLLPPSG GDDNIQPVDL KAALEERYLA YALSTIMHRA LPDVRDGLKP VHRRIIHAMS
EMGLRPNSSF KKCARIVGDV IGKFHPHGDQ SVYDALVRLA QDFSQRYPVV DGQGNFGNID
GDNAAAYRYT EAKMTEVAAL LLEGIDQDAV DFRPTYNEED QEPTVLPGAF PNLLANGASG
IAVGMATSIP PHNAHELCDA ALHLIKHPDA TVEDLLFDPA NPQRGGIEGP DFPTGGVIVE
SRASMAESYR TGRGGFRVRA RWAVEDLGRG GFQIVVTEIP YQVQKSRLIE KIAELLIARK
LPLLEDIRDE SAEDVRVVLV PKSRSVDANI LMESLFKLTE LESRIPLNMN VLSMGRVPRV
MALNEVLSEW LAHRREVLQR RSRHRLAAID RRLEILGGYL IAYLNIDEVI RIIREEDEPK
AVMIERFGLT DVQAEAILNM RLRSLRKLEE FEIRTEFDSL SKEKAEIEAL LASGDKQWQA
VAWEIGEVKK KFAKATELGK RRSTFSDAPD ADVEAIQQAM IEKEPITVVI SEKGWIRALK
GHIADTSSLQ FKDGDGLKVS FPAQTTDKIL IFTTGGKAYT LGGDKLPGGR GHGEPLRIMV
DMENDQDVLT AFVHDPARKL IVSSTAGNGF VVTESDIVAN TRKGKQVMNV TMPDEAKLVV
PVKGDHLAVV GENRKMLVFP LVQVPEMARG KGVRLQRYKD GGVSDIRSFA IAEGLTWEDS
AGRVFTKTRD ELIEWMGDRA GAGRVVPKGF PRSGKFSG