PAT1_ARATH
ID PAT1_ARATH Reviewed; 490 AA.
AC Q9LDL7; Q8GYN7;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Scarecrow-like transcription factor PAT1;
DE AltName: Full=GRAS family protein 29;
DE Short=AtGRAS-29;
DE AltName: Full=Protein PHYTOCHROME A SIGNAL TRANSDUCTION 1;
GN Name=PAT1; OrderedLocusNames=At5g48150; ORFNames=MIF21.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBCELLULAR LOCATION, AND DISRUPTION
RP PHENOTYPE.
RX PubMed=10817761;
RA Bolle C., Koncz C., Chua N.-H.;
RT "PAT1, a new member of the GRAS family, is involved in phytochrome A signal
RT transduction.";
RL Genes Dev. 14:1269-1278(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Kim C.J., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 55-490.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [6]
RP GENE FAMILY.
RX PubMed=15316287; DOI=10.1023/b:plan.0000038256.89809.57;
RA Tian C., Wan P., Sun S., Li J., Chen M.;
RT "Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.";
RL Plant Mol. Biol. 54:519-532(2004).
RN [7]
RP GENE FAMILY, AND TISSUE SPECIFICITY.
RX PubMed=18500650; DOI=10.1007/s11103-008-9345-1;
RA Lee M.-H., Kim B., Song S.-K., Heo J.-O., Yu N.-I., Lee S.A., Kim M.,
RA Kim D.G., Sohn S.O., Lim C.E., Chang K.S., Lee M.M., Lim J.;
RT "Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.";
RL Plant Mol. Biol. 67:659-670(2008).
CC -!- FUNCTION: Probable transcription factor involved in phytochrome A
CC (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
CC -!- INTERACTION:
CC Q9LDL7; Q9LY29: ERF115; NbExp=3; IntAct=EBI-25514815, EBI-2130977;
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:10817761}.
CC -!- DISRUPTION PHENOTYPE: Plants display reduced response to far-red (FR)
CC light. Seedlings develop long hypocotyls, unfolded cotyledons, no
CC significant anthocyanin accumulation, and greening after FR light.
CC {ECO:0000269|PubMed:10817761}.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC42147.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AF153443; AAF73237.1; -; mRNA.
DR EMBL; AB023039; BAA96995.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95624.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95625.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70908.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70909.1; -; Genomic_DNA.
DR EMBL; BT025326; ABF57282.1; -; mRNA.
DR EMBL; AK117483; BAC42147.1; ALT_INIT; mRNA.
DR RefSeq; NP_001332482.1; NM_001344761.1.
DR RefSeq; NP_001332483.1; NM_001344762.1.
DR RefSeq; NP_199626.1; NM_124189.6.
DR RefSeq; NP_974903.1; NM_203174.3.
DR AlphaFoldDB; Q9LDL7; -.
DR SMR; Q9LDL7; -.
DR BioGRID; 20114; 3.
DR IntAct; Q9LDL7; 2.
DR STRING; 3702.AT5G48150.2; -.
DR PaxDb; Q9LDL7; -.
DR PRIDE; Q9LDL7; -.
DR ProteomicsDB; 236326; -.
DR EnsemblPlants; AT5G48150.1; AT5G48150.1; AT5G48150.
DR EnsemblPlants; AT5G48150.2; AT5G48150.2; AT5G48150.
DR EnsemblPlants; AT5G48150.3; AT5G48150.3; AT5G48150.
DR EnsemblPlants; AT5G48150.4; AT5G48150.4; AT5G48150.
DR GeneID; 834867; -.
DR Gramene; AT5G48150.1; AT5G48150.1; AT5G48150.
DR Gramene; AT5G48150.2; AT5G48150.2; AT5G48150.
DR Gramene; AT5G48150.3; AT5G48150.3; AT5G48150.
DR Gramene; AT5G48150.4; AT5G48150.4; AT5G48150.
DR KEGG; ath:AT5G48150; -.
DR Araport; AT5G48150; -.
DR TAIR; locus:2164783; AT5G48150.
DR eggNOG; ENOG502QRZD; Eukaryota.
DR HOGENOM; CLU_011924_6_0_1; -.
DR InParanoid; Q9LDL7; -.
DR OMA; EMDSWRQ; -.
DR OrthoDB; 483185at2759; -.
DR PhylomeDB; Q9LDL7; -.
DR PRO; PR:Q9LDL7; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LDL7; baseline and differential.
DR Genevisible; Q9LDL7; AT.
DR GO; GO:0005737; C:cytoplasm; IDA:TAIR.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:1990110; P:callus formation; IGI:TAIR.
DR GO; GO:0009640; P:photomorphogenesis; IMP:TAIR.
DR GO; GO:0009585; P:red, far-red light phototransduction; IMP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 1: Evidence at protein level;
KW Cytoplasm; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..490
FT /note="Scarecrow-like transcription factor PAT1"
FT /id="PRO_0000350845"
FT DOMAIN 110..490
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 117..178
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 197..262
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 278..310
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 319..413
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 416..490
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 228..232
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
SQ SEQUENCE 490 AA; 55290 MW; 843A48A2F12C84A5 CRC64;
MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS
CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA SQEINGWRST LEAISRRDLR
ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK
ALNRCPEPAS TELLSYMHIL YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ
WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE
QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI NVEQHCLARD VVNIIACEGA
DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH
RDLVASCAWK
