PCF3_ORYSJ
ID PCF3_ORYSJ Reviewed; 448 AA.
AC Q53PH2; Q0IU90; Q2R9V3; Q8LP98;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 24-MAY-2005, sequence version 1.
DT 03-AUG-2022, entry version 79.
DE RecName: Full=Transcription factor PCF3;
GN Name=PCF3; OrderedLocusNames=Os11g0175700, LOC_Os11g07460;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 27-448, AND FUNCTION.
RC STRAIN=cv. Nipponbare;
RX PubMed=12000681; DOI=10.1046/j.1365-313x.2002.01294.x;
RA Kosugi S., Ohashi Y.;
RT "DNA binding and dimerization specificity and potential targets for the TCP
RT protein family.";
RL Plant J. 30:337-348(2002).
CC -!- FUNCTION: Transcription activator. Binds the promoter core sequence 5'-
CC GGNCC-3'. {ECO:0000269|PubMed:12000681}.
CC -!- SUBUNIT: Forms homodimers and heterodimers. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABA91711.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF27725.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AC120539; AAX95798.1; -; Genomic_DNA.
DR EMBL; DP000010; ABA91711.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008217; BAF27725.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP014967; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AB071804; BAB92951.1; -; mRNA.
DR AlphaFoldDB; Q53PH2; -.
DR SMR; Q53PH2; -.
DR STRING; 4530.OS11T0175700-00; -.
DR PaxDb; Q53PH2; -.
DR PRIDE; Q53PH2; -.
DR eggNOG; ENOG502QVJ6; Eukaryota.
DR HOGENOM; CLU_025170_2_0_1; -.
DR InParanoid; Q53PH2; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Genevisible; Q53PH2; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 2: Evidence at transcript level;
KW Activator; Developmental protein; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..448
FT /note="Transcription factor PCF3"
FT /id="PRO_0000330806"
FT DOMAIN 152..206
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 34..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 142..161
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 258..282
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 295..336
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 387..448
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 45..66
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 387..402
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 414..428
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 27..29
FT /note="VGG -> GTS (in Ref. 2; BAB92951)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 448 AA; 45852 MW; 74358D0E498D40BA CRC64;
MIKDLRTLES WAKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS
RSTSDHHAAA AAAAAAAAAQ VAHQHHPFYY AAAQGGANTM PAPASFMGSL AIVPAAAAPG
GGGGQVQAAA APVASSEKKA VVAAGAGAKR PTKDRHTKVE GRGRRIRMPA LCAARVFQLT
RELGHKTDGE TIEWLLQQAE PAIVAATGTG TIPANFSSLA VSLRSAASHS SSPRAAPFHH
LQQQQQHDVA AMLGFHHHHH QLLPPPPPHQ HPEPTPQDPG AGEFMRKRYR EADDLFKDTS
RQDPVDGATG EAEQKARAAA AAAAPPPTAP SAMWAVGPNT TGATAAFWMQ PAWAFPHGAG
AGAAGNTVQA PLQFMSRSSF PTAMNVTMAD NNNSSNNNLG MLAALNAGGG GRSGEHQHQH
EGQSPAEMDH QRRANGGGGE AGGAASSQ
