PCF5_ORYSI
ID PCF5_ORYSI Reviewed; 582 AA.
AC A2WM14;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 20-MAR-2007, sequence version 1.
DT 25-MAY-2022, entry version 69.
DE RecName: Full=Transcription factor PCF5;
GN Name=PCF5; ORFNames=OsI_000857;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2]
RP FUNCTION.
RX PubMed=12000681; DOI=10.1046/j.1365-313x.2002.01294.x;
RA Kosugi S., Ohashi Y.;
RT "DNA binding and dimerization specificity and potential targets for the TCP
RT protein family.";
RL Plant J. 30:337-348(2002).
CC -!- FUNCTION: Transcription activator. Binds the promoter core sequence 5'-
CC GGNCC-3'. {ECO:0000269|PubMed:12000681}.
CC -!- SUBUNIT: Forms homodimers and heterodimers with PCF2. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=EAY73010.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; CM000126; EAY73010.1; ALT_SEQ; Genomic_DNA.
DR AlphaFoldDB; A2WM14; -.
DR SMR; A2WM14; -.
DR STRING; 39946.A2WM14; -.
DR EnsemblPlants; BGIOSGA002128-TA; BGIOSGA002128-PA; BGIOSGA002128.
DR Gramene; BGIOSGA002128-TA; BGIOSGA002128-PA; BGIOSGA002128.
DR HOGENOM; CLU_033594_1_0_1; -.
DR OMA; DNQMSHH; -.
DR Proteomes; UP000007015; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 4: Predicted;
KW Activator; Developmental protein; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..582
FT /note="Transcription factor PCF5"
FT /id="PRO_0000330808"
FT DOMAIN 213..271
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 30..78
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 123..195
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 283..306
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 402..423
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 548..582
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 36..51
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 290..306
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 582 AA; 60254 MW; 9B2E887E380A9698 CRC64;
METRPPAAPA KLSYGIRRGG WTRIGAATVA AGKKAAGDLD PRHHHHRVTH GGDGGGVGGG
GSGGQEEADE QQQQQHDHHR LLQLHHHQGV QQDQEPPPVP VFHLQPASVR QLSGSSAEYA
LLSPMGDAGG HSHHHQHGFQ PQLLSFGGVG HHHHLHQFTA QPQPPAASHT RGRGGGGEIV
PATTTPRSRG GGGGGGGEIV AVQGGHIVRS TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ
FYDVQDRLGY DRPSKAVDWL IKNAKDAIDK LDVLPAWQPT AGGAGAGNAA APPSSSTHPD
SAENSDDQAQ AITVAHTAFD FAGGGSGGTS FLPPSLDSDA IADTIKSFFP MGGTAGGEAS
SSTTAAQSSA MGFQSYTPDL LSRTGSQSQE LRLSLQSLPD PMFHHQQHRH GGGGGGGNGT
TQQALFSGAA NYSFGGGAMW ATEQQAQNQR MLPWNVPDPG GGGGAAYLFN VSQQAAHMQA
AAAALGGHQS QFFFQRGPLQ SSNQPSERGW PETVEADNQM SHHQGGLSPS VSAAIGFAAP
GIGFSGFRLP ARIQGDEEHN GGGGGNGDKP PPPSSVSSAS HH
