PCF8_ORYSI
ID PCF8_ORYSI Reviewed; 297 AA.
AC A2ZMR9;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 20-MAR-2007, sequence version 1.
DT 25-MAY-2022, entry version 61.
DE RecName: Full=Transcription factor PCF8;
GN Name=PCF8; ORFNames=OsI_037862;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2]
RP FUNCTION.
RX PubMed=12000681; DOI=10.1046/j.1365-313x.2002.01294.x;
RA Kosugi S., Ohashi Y.;
RT "DNA binding and dimerization specificity and potential targets for the TCP
RT protein family.";
RL Plant J. 30:337-348(2002).
CC -!- FUNCTION: Transcription activator. Binds the promoter core sequence 5'-
CC GGNCC-3'. {ECO:0000269|PubMed:12000681}.
CC -!- SUBUNIT: Forms homodimers and heterodimers. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=A2ZMR9-1; Sequence=Displayed;
CC Name=2;
CC IsoId=A2ZMR9-2; Sequence=VSP_033119;
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DR EMBL; CM000137; EAY83903.1; -; Genomic_DNA.
DR AlphaFoldDB; A2ZMR9; -.
DR SMR; A2ZMR9; -.
DR STRING; 39946.A2ZMR9; -.
DR EnsemblPlants; BGIOSGA037799-TA; BGIOSGA037799-PA; BGIOSGA037799. [A2ZMR9-1]
DR Gramene; BGIOSGA037799-TA; BGIOSGA037799-PA; BGIOSGA037799. [A2ZMR9-1]
DR HOGENOM; CLU_070702_0_0_1; -.
DR OMA; HAYNGNA; -.
DR Proteomes; UP000007015; Chromosome 12.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 4: Predicted;
KW Activator; Alternative splicing; Developmental protein; DNA-binding;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..297
FT /note="Transcription factor PCF8"
FT /id="PRO_0000330814"
FT DOMAIN 46..104
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 116..136
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 273..297
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..16
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 19..107
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_033119"
SQ SEQUENCE 297 AA; 30897 MW; 9384A691241FB16E CRC64;
MEEVVGGGKE RKRPRGALVG VGGGGESAAT AAAWRTSRVA RAAAGGKDRH SKVVTSRGLR
DRRVRLSVPT AIAFYDIQDR LGVDQPSKAI EWLIRAAAAA IDALPSLDCS FALPAAASSP
PPPAADDAEV STSETSKSSV LSLANAPCDN GGGAFAELLH CSNTNGSKPL QQQQQATLAY
YAAAQSAHMA APMSFEVMAM PPHLAFSQEQ QQHATVAAFD RGTLQSNASL WPPPPQPPPS
QHPFLLQRFA AAPAEVAGLP FFLAGGVGGA AAAAPAATTN GGERRLQLWD FKEERKT
