PCF8_ORYSJ
ID PCF8_ORYSJ Reviewed; 297 AA.
AC Q2QM59; Q0ILW5; Q8LP97;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 80.
DE RecName: Full=Transcription factor PCF8;
GN Name=PCF8; OrderedLocusNames=Os12g0616400, LOC_Os12g42190;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND FUNCTION.
RC STRAIN=cv. Nipponbare;
RX PubMed=12000681; DOI=10.1046/j.1365-313x.2002.01294.x;
RA Kosugi S., Ohashi Y.;
RT "DNA binding and dimerization specificity and potential targets for the TCP
RT protein family.";
RL Plant J. 30:337-348(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Transcription activator. Binds the promoter core sequence 5'-
CC GGNCC-3'. {ECO:0000269|PubMed:12000681}.
CC -!- SUBUNIT: Forms homodimers and heterodimers. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q2QM59-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q2QM59-2; Sequence=VSP_033118;
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC01119.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=BAF30300.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB071808; BAC01119.1; ALT_INIT; mRNA.
DR EMBL; DP000011; ABA99859.1; -; Genomic_DNA.
DR EMBL; AP008218; BAF30300.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014968; BAT18100.1; -; Genomic_DNA.
DR EMBL; AK106830; -; NOT_ANNOTATED_CDS; mRNA.
DR AlphaFoldDB; Q2QM59; -.
DR SMR; Q2QM59; -.
DR STRING; 4530.OS12T0616400-01; -.
DR PaxDb; Q2QM59; -.
DR PRIDE; Q2QM59; -.
DR EnsemblPlants; Os12t0616400-01; Os12t0616400-01; Os12g0616400. [Q2QM59-2]
DR EnsemblPlants; Os12t0616400-02; Os12t0616400-02; Os12g0616400. [Q2QM59-1]
DR Gramene; Os12t0616400-01; Os12t0616400-01; Os12g0616400. [Q2QM59-2]
DR Gramene; Os12t0616400-02; Os12t0616400-02; Os12g0616400. [Q2QM59-1]
DR eggNOG; ENOG502QQFU; Eukaryota.
DR HOGENOM; CLU_070702_0_0_1; -.
DR InParanoid; Q2QM59; -.
DR OMA; AWRSFRV; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q2QM59; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:2000032; P:regulation of secondary shoot formation; IBA:GO_Central.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 2: Evidence at transcript level;
KW Activator; Alternative splicing; Developmental protein; DNA-binding;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..297
FT /note="Transcription factor PCF8"
FT /id="PRO_0000330813"
FT DOMAIN 46..104
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 116..136
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 273..297
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 19..107
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_033118"
FT CONFLICT 111
FT /note="F -> L (in Ref. 1; BAC01119)"
FT /evidence="ECO:0000305"
FT CONFLICT 144
FT /note="A -> P (in Ref. 6; AK106830)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 297 AA; 30881 MW; 9C5788E4B847AA10 CRC64;
MEEVVVGGKE RKRPRGALVG VGGGGASAAT AAAWRTSRVA RAAAGGKDRH SKVVTSRGLR
DRRVRLSVPT AIAFYDIQDR LGVDQPSKAI EWLIRAAAAA IDALPSLDCS FALPAAASSP
PPPAADDAEV STSETSKSSV LSLANAPCDN GGGAFAELLH CSNTNGSKPL QQQQQATLAY
YAAAQSAHMA APMSFEVMAM PPHLAFSQEQ QQHATVAAFD RGTLQSNASL WPPPPQPPPS
QHPFLLQRFA AAPAEVAGLP FFLAGGVGGA AAAAPAATTN GGERRLQLWD FKEERKT
