PCL1_ORYSJ
ID PCL1_ORYSJ Reviewed; 238 AA.
AC Q94DH3; A0A0N7KEH5; Q6PT61;
DT 24-JUL-2013, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 150.
DE RecName: Full=Transcription factor PCL1;
DE AltName: Full=Protein PHYTOCLOCK 1 homolog;
DE Short=OsPCL1;
GN Name=PCL1; OrderedLocusNames=Os01g0971800; ORFNames=OsJ_04927, P0518C01.17;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND INDUCTION.
RX PubMed=16164597; DOI=10.1111/j.1365-2443.2005.00892.x;
RA Onai K., Ishiura M.;
RT "PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis
RT circadian clock.";
RL Genes Cells 10:963-972(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Zhonghua 11;
RA Qu L., Gu H.;
RT "Characterization of two downstream proteins in a possible two-component
RT system in the early responses of rice to infection by a fungal pathogen.";
RL Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Transcription factor that is essential for the generation of
CC the circadian clock oscillation. Binds to specific sites on CCA1
CC promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- INDUCTION: Circadian oscillation with peaks at subjective dusk.
CC {ECO:0000269|PubMed:16164597}.
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DR EMBL; AB206578; BAE16279.1; -; Genomic_DNA.
DR EMBL; AY581256; AAS90600.1; -; mRNA.
DR EMBL; AP003277; BAB63676.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF07451.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS76433.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ14991.1; -; Genomic_DNA.
DR RefSeq; XP_015640779.1; XM_015785293.1.
DR AlphaFoldDB; Q94DH3; -.
DR SMR; Q94DH3; -.
DR STRING; 4530.OS01T0971800-00; -.
DR iPTMnet; Q94DH3; -.
DR PaxDb; Q94DH3; -.
DR PRIDE; Q94DH3; -.
DR EnsemblPlants; Os01t0971800-01; Os01t0971800-01; Os01g0971800.
DR Gramene; Os01t0971800-01; Os01t0971800-01; Os01g0971800.
DR KEGG; osa:4326391; -.
DR eggNOG; ENOG502RIEW; Eukaryota.
DR HOGENOM; CLU_055357_2_0_1; -.
DR InParanoid; Q94DH3; -.
DR OMA; GHNSNGH; -.
DR OrthoDB; 1031940at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q94DH3; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR044841; LUX/BOA-like.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR PANTHER; PTHR31442; PTHR31442; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW Biological rhythms; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..238
FT /note="Transcription factor PCL1"
FT /id="PRO_0000422985"
FT DNA_BIND 115..174
FT /note="Myb-like GARP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 71..119
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 71..87
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 105..119
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 24
FT /note="T -> A (in Ref. 2; AAS90600)"
FT /evidence="ECO:0000305"
FT CONFLICT 93
FT /note="T -> A (in Ref. 2; AAS90600)"
FT /evidence="ECO:0000305"
FT CONFLICT 105
FT /note="D -> N (in Ref. 2; AAS90600)"
FT /evidence="ECO:0000305"
FT CONFLICT 114
FT /note="S -> N (in Ref. 2; AAS90600)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 238 AA; 25617 MW; 2360194B496C2974 CRC64;
MGEEAPEEYE LGGGEDERVM EWETGLPGAD ELTPLSQPLV PAGLAAAFRI PPEPGRTLLD
VHRASAATVS RLRRASSSSS SSFPAFASKG AGTGADEAES GGGADGGNGN TNNSSSKRAR
LVWTPQLHKR FVEVVAHLGM KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYVKRMQGLS
NEGPSPSDHI FASTPVPHAS LHDQVPSPYH PHPHHHSYNN AAYAATVSSY HHYHHANH
