PCLL_ARATH
ID PCLL_ARATH Reviewed; 298 AA.
AC Q9LTH4; Q8LA15;
DT 24-JUL-2013, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 145.
DE RecName: Full=Transcription factor BOA;
DE AltName: Full=Protein BROTHER OF LUX ARRHYTHMO;
DE AltName: Full=Protein PHYTOCLOCK 1-like;
DE Short=Protein PCL1-like;
GN Name=BOA; Synonyms=PCLL; OrderedLocusNames=At5g59570; ORFNames=F2O15.230;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=16164597; DOI=10.1111/j.1365-2443.2005.00892.x;
RA Onai K., Ishiura M.;
RT "PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis
RT circadian clock.";
RL Genes Cells 10:963-972(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=21447790; DOI=10.1105/tpc.111.084293;
RA Dai S., Wei X., Pei L., Thompson R.L., Liu Y., Heard J.E., Ruff T.G.,
RA Beachy R.N.;
RT "BROTHER OF LUX ARRHYTHMO is a component of the Arabidopsis circadian
RT clock.";
RL Plant Cell 23:961-972(2011).
CC -!- FUNCTION: Transcription factor that is a critical component of the
CC regulatory circuit of the circadian clock. Binds to specific sites on
CC CCA1 promoter leading to CCA1 activation. Is required for the rhythmic
CC expression of other clock genes such as LHY, GI and APRR1/TOC1.
CC {ECO:0000269|PubMed:21447790}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625,
CC ECO:0000269|PubMed:21447790}.
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DR EMBL; AB206577; BAE16278.1; -; Genomic_DNA.
DR EMBL; AB025604; BAA97491.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97207.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM69715.1; -; Genomic_DNA.
DR EMBL; AK117348; BAC42018.1; -; mRNA.
DR EMBL; BT026065; ABG48421.1; -; mRNA.
DR EMBL; AY088089; AAM65635.1; -; mRNA.
DR RefSeq; NP_001331374.1; NM_001345359.1.
DR RefSeq; NP_200765.1; NM_125349.3.
DR AlphaFoldDB; Q9LTH4; -.
DR SMR; Q9LTH4; -.
DR BioGRID; 21320; 19.
DR IntAct; Q9LTH4; 18.
DR STRING; 3702.AT5G59570.1; -.
DR PaxDb; Q9LTH4; -.
DR PRIDE; Q9LTH4; -.
DR ProteomicsDB; 236335; -.
DR EnsemblPlants; AT5G59570.1; AT5G59570.1; AT5G59570.
DR EnsemblPlants; AT5G59570.2; AT5G59570.2; AT5G59570.
DR GeneID; 836076; -.
DR Gramene; AT5G59570.1; AT5G59570.1; AT5G59570.
DR Gramene; AT5G59570.2; AT5G59570.2; AT5G59570.
DR KEGG; ath:AT5G59570; -.
DR Araport; AT5G59570; -.
DR TAIR; locus:2148348; AT5G59570.
DR eggNOG; ENOG502RIEW; Eukaryota.
DR HOGENOM; CLU_055357_1_0_1; -.
DR InParanoid; Q9LTH4; -.
DR OMA; AFPKTIM; -.
DR OrthoDB; 1031940at2759; -.
DR PhylomeDB; Q9LTH4; -.
DR PRO; PR:Q9LTH4; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LTH4; baseline and differential.
DR Genevisible; Q9LTH4; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:TAIR.
DR GO; GO:0007623; P:circadian rhythm; IMP:TAIR.
DR GO; GO:0009909; P:regulation of flower development; IMP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR044841; LUX/BOA-like.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR PANTHER; PTHR31442; PTHR31442; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW Biological rhythms; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..298
FT /note="Transcription factor BOA"
FT /id="PRO_0000422984"
FT DNA_BIND 138..197
FT /note="Myb-like GARP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 79..143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 206..232
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 100..116
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 206..231
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 45
FT /note="Y -> S (in Ref. 6; AAM65635)"
FT /evidence="ECO:0000305"
FT CONFLICT 283
FT /note="T -> K (in Ref. 6; AAM65635)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 298 AA; 32367 MW; 5F1315182637F9F7 CRC64;
MGKEVMVSDY GDDDGEDAGG GDEYRIPEWE IGLPNGDDLT PLSQYLVPSI LALAFSMIPE
RSRTIHDVNR ASQITLSSLR SSTNASSVME EVVDRVESSV PGSDPKKQKK SDGGEAAAVE
DSTAEEGDSG PEDASGKTSK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL
TRENVASHLQ KYRLYLKRIQ GLTTEEDPYS SSDQLFSSTP VPPQSFQDGG GSNGKLGVPV
PVPSMVPIPG YGNQMGMQGY YQQYSNHGNE SNQYMMQQNK FGTMVTYPSV GGGDVNDK
