PDCB3_ARATH
ID PDCB3_ARATH Reviewed; 184 AA.
AC Q9FZ86;
DT 03-SEP-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=PLASMODESMATA CALLOSE-BINDING PROTEIN 3;
DE Short=AtPDCB3;
DE Flags: Precursor;
GN Name=PDCB3; OrderedLocusNames=At1g18650; ORFNames=F25I16.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, NOMENCLATURE, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND
RP GPI-ANCHOR.
RX PubMed=19223515; DOI=10.1105/tpc.108.060145;
RA Simpson C., Thomas C., Findlay K., Bayer E., Maule A.J.;
RT "An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding
RT activity and potential to regulate cell-to-cell trafficking.";
RL Plant Cell 21:581-594(2009).
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:19223515};
CC Lipid-anchor, GPI-anchor {ECO:0000269|PubMed:19223515}. Cell junction,
CC plasmodesma {ECO:0000269|PubMed:19223515}.
CC -!- TISSUE SPECIFICITY: Expressed in the shoot apical region and in young
CC leaves but also detected in the laminar and vasculature of mature
CC leaves. {ECO:0000269|PubMed:19223515}.
CC -!- PTM: Contains two additional disulfide bonds. {ECO:0000250}.
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DR EMBL; AC026238; AAF98409.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29739.1; -; Genomic_DNA.
DR EMBL; BT006195; AAP12844.1; -; mRNA.
DR EMBL; AK228238; BAF00186.1; -; mRNA.
DR EMBL; AY087143; AAM64701.1; -; mRNA.
DR PIR; C86320; C86320.
DR RefSeq; NP_564059.1; NM_101723.4.
DR AlphaFoldDB; Q9FZ86; -.
DR SMR; Q9FZ86; -.
DR STRING; 3702.AT1G18650.1; -.
DR CAZy; CBM43; Carbohydrate-Binding Module Family 43.
DR TCDB; 1.I.2.1.1; the plant plasmodesmata (ppd) family.
DR PaxDb; Q9FZ86; -.
DR PRIDE; Q9FZ86; -.
DR ProteomicsDB; 236375; -.
DR EnsemblPlants; AT1G18650.1; AT1G18650.1; AT1G18650.
DR GeneID; 838446; -.
DR Gramene; AT1G18650.1; AT1G18650.1; AT1G18650.
DR KEGG; ath:AT1G18650; -.
DR Araport; AT1G18650; -.
DR TAIR; locus:2027428; AT1G18650.
DR eggNOG; ENOG502RYRZ; Eukaryota.
DR HOGENOM; CLU_031666_1_0_1; -.
DR InParanoid; Q9FZ86; -.
DR OrthoDB; 1471001at2759; -.
DR PhylomeDB; Q9FZ86; -.
DR PRO; PR:Q9FZ86; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FZ86; baseline and differential.
DR Genevisible; Q9FZ86; AT.
DR GO; GO:0031225; C:anchored component of membrane; TAS:TAIR.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009506; C:plasmodesma; IDA:TAIR.
DR GO; GO:0001872; F:(1->3)-beta-D-glucan binding; ISS:TAIR.
DR GO; GO:0030247; F:polysaccharide binding; ISS:TAIR.
DR InterPro; IPR012946; X8.
DR InterPro; IPR044788; X8_dom_prot.
DR PANTHER; PTHR31044; PTHR31044; 1.
DR Pfam; PF07983; X8; 1.
DR SMART; SM00768; X8; 1.
PE 1: Evidence at protein level;
KW Cell junction; Cell membrane; Disulfide bond; Glycoprotein; GPI-anchor;
KW Lipoprotein; Membrane; Reference proteome; Signal.
FT SIGNAL 1..19
FT /evidence="ECO:0000255"
FT CHAIN 20..158
FT /note="PLASMODESMATA CALLOSE-BINDING PROTEIN 3"
FT /id="PRO_0000430194"
FT PROPEP 159..184
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000430195"
FT REGION 109..146
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 109..144
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT LIPID 158
FT /note="GPI-anchor amidated serine"
FT /evidence="ECO:0000255"
FT DISULFID 22..84
FT /evidence="ECO:0000250"
SQ SEQUENCE 184 AA; 19336 MW; 65A334BEE21D4192 CRC64;
MAVFVLVMIL LAMAGHSSGT WCVCKEGLSE AMLQKTLDYA CGAGADCGPI HQTGPCFNPN
TVKSHCSYAV NSFFQKKGQS LGTCDFAGTA TFSASDPSYT TCPFPASASG SGTTTPVTTT
PSTRVPTTTN TRPYTITPST GGGLGIPSGI NPDYTDPSFG FKLQSPRFGF IVLFTLFLPF
YLFS
