PDCB5_ARATH
ID PDCB5_ARATH Reviewed; 180 AA.
AC Q9M2K6; Q1ECG5; Q8LDH7;
DT 17-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 2.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=PLASMODESMATA CALLOSE-BINDING PROTEIN 5;
DE Short=AtPDCB5;
DE AltName: Full=Glucan endo-1,3-beta-glucosidase-like protein 1;
DE Flags: Precursor;
GN Name=PDCB5; OrderedLocusNames=At3g58100; ORFNames=F9D24.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Quinitio C., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY, NOMENCLATURE, AND SUBCELLULAR LOCATION.
RX PubMed=19223515; DOI=10.1105/tpc.108.060145;
RA Simpson C., Thomas C., Findlay K., Bayer E., Maule A.J.;
RT "An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding
RT activity and potential to regulate cell-to-cell trafficking.";
RL Plant Cell 21:581-594(2009).
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:19223515};
CC Lipid-anchor, GPI-anchor {ECO:0000269|PubMed:19223515}. Cell junction,
CC plasmodesma {ECO:0000269|PubMed:19223515}.
CC -!- PTM: Contains two additional disulfide bonds. {ECO:0000250}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM67357.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB68148.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL137081; CAB68148.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE79741.1; -; Genomic_DNA.
DR EMBL; AY085999; AAM67357.1; ALT_INIT; mRNA.
DR EMBL; BT025769; ABF83659.1; -; mRNA.
DR PIR; T45970; T45970.
DR RefSeq; NP_001327504.1; NM_001339907.1.
DR RefSeq; NP_567060.1; NM_115672.3.
DR AlphaFoldDB; Q9M2K6; -.
DR SMR; Q9M2K6; -.
DR CAZy; CBM43; Carbohydrate-Binding Module Family 43.
DR TCDB; 1.I.2.1.1; the plant plasmodesmata (ppd) family.
DR PaxDb; Q9M2K6; -.
DR PRIDE; Q9M2K6; -.
DR ProteomicsDB; 236366; -.
DR EnsemblPlants; AT3G58100.1; AT3G58100.1; AT3G58100.
DR GeneID; 824979; -.
DR Gramene; AT3G58100.1; AT3G58100.1; AT3G58100.
DR KEGG; ath:AT3G58100; -.
DR Araport; AT3G58100; -.
DR TAIR; locus:2085410; AT3G58100.
DR eggNOG; ENOG502S2JG; Eukaryota.
DR HOGENOM; CLU_128427_0_0_1; -.
DR InParanoid; Q9M2K6; -.
DR OMA; LQVELWC; -.
DR OrthoDB; 1452505at2759; -.
DR PhylomeDB; Q9M2K6; -.
DR PRO; PR:Q9M2K6; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M2K6; baseline and differential.
DR Genevisible; Q9M2K6; AT.
DR GO; GO:0031225; C:anchored component of membrane; TAS:TAIR.
DR GO; GO:0046658; C:anchored component of plasma membrane; HDA:TAIR.
DR GO; GO:0009506; C:plasmodesma; IDA:TAIR.
DR GO; GO:0001872; F:(1->3)-beta-D-glucan binding; ISS:TAIR.
DR GO; GO:0030247; F:polysaccharide binding; ISS:TAIR.
DR InterPro; IPR012946; X8.
DR InterPro; IPR044788; X8_dom_prot.
DR PANTHER; PTHR31044; PTHR31044; 1.
DR Pfam; PF07983; X8; 1.
DR SMART; SM00768; X8; 1.
PE 2: Evidence at transcript level;
KW Cell junction; Cell membrane; Disulfide bond; Glycoprotein; GPI-anchor;
KW Lipoprotein; Membrane; Reference proteome; Signal.
FT SIGNAL 1..29
FT /evidence="ECO:0000255"
FT CHAIN 30..157
FT /note="PLASMODESMATA CALLOSE-BINDING PROTEIN 5"
FT /id="PRO_0000253999"
FT PROPEP 158..180
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000254000"
FT REGION 126..151
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT LIPID 157
FT /note="GPI-anchor amidated serine"
FT /evidence="ECO:0000255"
FT DISULFID 42..105
FT /evidence="ECO:0000250"
FT CONFLICT 138
FT /note="Missing (in Ref. 3; AAM67357)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 180 AA; 19171 MW; E130E5961CFC78F1 CRC64;
MIMSLPQCSH LRLSILAATA AMLMVITTAQ IGGQVIQVEL WCVAKNNAED SSLQTAIEWA
CGQGGADCGP IQQGGPCNDP TDVQKMASFV FNNYYLKNGE EDEACNFNNN AALTSLNPSQ
GTCKYPSSKG ANNGRLADDT SMGAGQADMS RGGRPISSSW MVTFIGFGSL LTMTWIIHHL
