PDXL4_ARATH
ID PDXL4_ARATH Reviewed; 79 AA.
AC O80446;
DT 15-MAR-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 03-AUG-2022, entry version 123.
DE RecName: Full=Pyridoxal 5'-phosphate synthase PDX1-like 4;
GN Name=PDX1L4; OrderedLocusNames=At2g38210; ORFNames=F16M14.14;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- SIMILARITY: Belongs to the PdxS/SNZ family. {ECO:0000305}.
CC -!- CAUTION: Although its N-terminus is strongly related to pyridoxal 5'-
CC phosphate synthase PDX1 subunits (PDX1), it is much shorter and
CC probably not functional. {ECO:0000305}.
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DR EMBL; AC003028; AAC27170.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09509.1; -; Genomic_DNA.
DR PIR; C84802; C84802.
DR RefSeq; NP_181356.1; NM_129378.4.
DR AlphaFoldDB; O80446; -.
DR SMR; O80446; -.
DR BioGRID; 3742; 4.
DR STRING; 3702.AT2G38210.1; -.
DR MetOSite; O80446; -.
DR PaxDb; O80446; -.
DR PRIDE; O80446; -.
DR ProteomicsDB; 236291; -.
DR EnsemblPlants; AT2G38210.1; AT2G38210.1; AT2G38210.
DR GeneID; 818400; -.
DR Gramene; AT2G38210.1; AT2G38210.1; AT2G38210.
DR KEGG; ath:AT2G38210; -.
DR Araport; AT2G38210; -.
DR TAIR; locus:2042907; AT2G38210.
DR eggNOG; KOG1606; Eukaryota.
DR HOGENOM; CLU_2609332_0_0_1; -.
DR InParanoid; O80446; -.
DR OMA; PGLIKEY; -.
DR OrthoDB; 1090029at2759; -.
DR PRO; PR:O80446; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O80446; baseline and differential.
DR Genevisible; O80446; AT.
DR GO; GO:0005783; C:endoplasmic reticulum; HDA:TAIR.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0016843; F:amine-lyase activity; IBA:GO_Central.
DR GO; GO:0006520; P:cellular amino acid metabolic process; IBA:GO_Central.
DR GO; GO:0042823; P:pyridoxal phosphate biosynthetic process; IBA:GO_Central.
DR GO; GO:0008615; P:pyridoxine biosynthetic process; IBA:GO_Central.
DR Gene3D; 3.20.20.70; -; 1.
DR InterPro; IPR013785; Aldolase_TIM.
DR InterPro; IPR001852; PdxS/SNZ.
DR InterPro; IPR033755; PdxS/SNZ_N.
DR PANTHER; PTHR31829; PTHR31829; 1.
DR Pfam; PF01680; SOR_SNZ; 1.
DR PROSITE; PS51129; PDXS_SNZ_2; 1.
PE 3: Inferred from homology;
KW Reference proteome.
FT CHAIN 1..79
FT /note="Pyridoxal 5'-phosphate synthase PDX1-like 4"
FT /id="PRO_0000109369"
SQ SEQUENCE 79 AA; 8141 MW; 8D153B28C8A5BC2A CRC64;
MAGTGVVAVY GEGAMTETKQ KSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM
ALERVPADIR AQGGVARFC
