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PDXT_NIACI
ID   PDXT_NIACI              Reviewed;         190 AA.
AC   Q8L1A7;
DT   05-JUL-2005, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2002, sequence version 1.
DT   03-AUG-2022, entry version 62.
DE   RecName: Full=Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000255|HAMAP-Rule:MF_01615};
DE            EC=4.3.3.6 {ECO:0000255|HAMAP-Rule:MF_01615};
DE   AltName: Full=Pdx2 {ECO:0000255|HAMAP-Rule:MF_01615};
DE   AltName: Full=Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000255|HAMAP-Rule:MF_01615};
DE            EC=3.5.1.2 {ECO:0000255|HAMAP-Rule:MF_01615};
GN   Name=pdxT {ECO:0000255|HAMAP-Rule:MF_01615}; Synonyms=btrC2;
OS   Niallia circulans (Bacillus circulans).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Niallia.
OX   NCBI_TaxID=1397;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PROTEIN SEQUENCE OF 1-24.
RX   PubMed=12224638; DOI=10.1271/bbb.66.1538;
RA   Tamegai H., Nango E., Koike-Takeshita A., Kudo F., Kakinuma K.;
RT   "Significance of the 20-kDa subunit of heterodimeric 2-deoxy-scyllo-inosose
RT   synthase for the biosynthesis of butirosin antibiotics in Bacillus
RT   circulans.";
RL   Biosci. Biotechnol. Biochem. 66:1538-1545(2002).
CC   -!- FUNCTION: Catalyzes the hydrolysis of glutamine to glutamate and
CC       ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The
CC       resulting ammonia molecule is channeled to the active site of PdxS.
CC       {ECO:0000255|HAMAP-Rule:MF_01615}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=aldehydo-D-ribose 5-phosphate + D-glyceraldehyde 3-phosphate +
CC         L-glutamine = H(+) + 3 H2O + L-glutamate + phosphate + pyridoxal 5'-
CC         phosphate; Xref=Rhea:RHEA:31507, ChEBI:CHEBI:15377,
CC         ChEBI:CHEBI:15378, ChEBI:CHEBI:29985, ChEBI:CHEBI:43474,
CC         ChEBI:CHEBI:58273, ChEBI:CHEBI:58359, ChEBI:CHEBI:59776,
CC         ChEBI:CHEBI:597326; EC=4.3.3.6; Evidence={ECO:0000255|HAMAP-
CC         Rule:MF_01615};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=H2O + L-glutamine = L-glutamate + NH4(+);
CC         Xref=Rhea:RHEA:15889, ChEBI:CHEBI:15377, ChEBI:CHEBI:28938,
CC         ChEBI:CHEBI:29985, ChEBI:CHEBI:58359; EC=3.5.1.2;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01615};
CC   -!- PATHWAY: Cofactor biosynthesis; pyridoxal 5'-phosphate biosynthesis.
CC       {ECO:0000255|HAMAP-Rule:MF_01615}.
CC   -!- SUBUNIT: In the presence of PdxS, forms a dodecamer of heterodimers.
CC       Only shows activity in the heterodimer. {ECO:0000255|HAMAP-
CC       Rule:MF_01615}.
CC   -!- SIMILARITY: Belongs to the glutaminase PdxT/SNO family.
CC       {ECO:0000255|HAMAP-Rule:MF_01615}.
CC   -!- CAUTION: Was originally believed to be a subunit of the 2-deoxy-scyllo-
CC       inosose synthase. {ECO:0000305|PubMed:12224638}.
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DR   EMBL; AB066209; BAC06853.1; -; Genomic_DNA.
DR   AlphaFoldDB; Q8L1A7; -.
DR   SMR; Q8L1A7; -.
DR   PRIDE; Q8L1A7; -.
DR   BioCyc; MetaCyc:MON-17226; -.
DR   BRENDA; 4.3.3.6; 649.
DR   UniPathway; UPA00245; -.
DR   GO; GO:0004359; F:glutaminase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0036381; F:pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0006543; P:glutamine catabolic process; IEA:UniProtKB-UniRule.
DR   GO; GO:0042823; P:pyridoxal phosphate biosynthetic process; IEA:UniProtKB-UniRule.
DR   CDD; cd01749; GATase1_PB; 1.
DR   Gene3D; 3.40.50.880; -; 1.
DR   HAMAP; MF_01615; PdxT; 1.
DR   InterPro; IPR029062; Class_I_gatase-like.
DR   InterPro; IPR002161; PdxT/SNO.
DR   InterPro; IPR021196; PdxT/SNO_CS.
DR   PANTHER; PTHR31559; PTHR31559; 1.
DR   Pfam; PF01174; SNO; 1.
DR   PIRSF; PIRSF005639; Glut_amidoT_SNO; 1.
DR   SUPFAM; SSF52317; SSF52317; 1.
DR   TIGRFAMs; TIGR03800; PLP_synth_Pdx2; 1.
DR   PROSITE; PS01236; PDXT_SNO_1; 1.
DR   PROSITE; PS51130; PDXT_SNO_2; 1.
PE   1: Evidence at protein level;
KW   Direct protein sequencing; Glutamine amidotransferase; Hydrolase; Lyase;
KW   Pyridoxal phosphate.
FT   CHAIN           1..190
FT                   /note="Pyridoxal 5'-phosphate synthase subunit PdxT"
FT                   /id="PRO_0000135624"
FT   ACT_SITE        78
FT                   /note="Nucleophile"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01615"
FT   ACT_SITE        169
FT                   /note="Charge relay system"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01615"
FT   ACT_SITE        171
FT                   /note="Charge relay system"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01615"
FT   BINDING         46..48
FT                   /ligand="L-glutamine"
FT                   /ligand_id="ChEBI:CHEBI:58359"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01615"
FT   BINDING         105
FT                   /ligand="L-glutamine"
FT                   /ligand_id="ChEBI:CHEBI:58359"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01615"
FT   BINDING         133..134
FT                   /ligand="L-glutamine"
FT                   /ligand_id="ChEBI:CHEBI:58359"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01615"
SQ   SEQUENCE   190 AA;  20599 MW;  3C24AC1FAB1E9500 CRC64;
     MKVGVLALQG AVAEHIRLIE AVGGEGVVVK RAEQLAELDG LIIPGGESTT IGKLMRRYGF
     IEAIRDFSNQ GKAVFGTCAG LIVIADKIAG QEEAHLGLMD MTVQRNAFGR QRESFETDLP
     VKGIDRPVRA VFIRAPLIDQ VGNGVDVLSE YNGQIVAARQ GHLLAASFHP ELTDDSSMHA
     YFLDMIREAR
 
 
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