PGIP1_ORYSJ
ID PGIP1_ORYSJ Reviewed; 332 AA.
AC Q8GT95; Q0D5C7;
DT 05-JUL-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Polygalacturonase inhibitor 1;
DE AltName: Full=Floral organ regulator 1 {ECO:0000303|PubMed:14750524};
DE AltName: Full=Polygalacturonase-inhibiting protein 1;
DE Short=PGIP-1;
DE Flags: Precursor;
GN Name=FOR1 {ECO:0000303|PubMed:14750524};
GN OrderedLocusNames=Os07g0568700, LOC_Os07g38130;
GN ORFNames=OJ1019_E02.4, OsJ_24796 {ECO:0000312|EMBL:EAZ40350.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, DISRUPTION PHENOTYPE, TISSUE
RP SPECIFICITY, AND DEVELOPMENTAL STAGE.
RC STRAIN=cv. Dongjin; TISSUE=Panicle;
RX PubMed=14750524; DOI=10.1023/b:plan.0000006940.89955.f1;
RA Jang S., Lee B., Kim C., Kim S.-J., Yim J., Han J.-J., Lee S., Kim S.-R.,
RA An G.;
RT "The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that
RT regulates floral organ number in rice.";
RL Plant Mol. Biol. 53:357-369(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Inhibitor of fungal polygalacturonase. Regulates floral organ
CC number. {ECO:0000269|PubMed:14750524}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall
CC {ECO:0000250|UniProtKB:P58822}.
CC -!- TISSUE SPECIFICITY: Highly expressed in calli, immature and mature
CC panicles, and in three inner floral organs: lodicules, stamens and
CC carpels. Expressed at low level in seedling roots and mature stems.
CC {ECO:0000269|PubMed:14750524}.
CC -!- DEVELOPMENTAL STAGE: Expression increases in the maturing panicle, but
CC is low in developing seed. {ECO:0000269|PubMed:14750524}.
CC -!- DISRUPTION PHENOTYPE: Increased numbers of floral organs, including the
CC stamen, carpel, palea/lemma, stigma and lodicule.
CC {ECO:0000269|PubMed:14750524}.
CC -!- SIMILARITY: Belongs to the polygalacturonase-inhibiting protein family.
CC {ECO:0000305}.
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DR EMBL; AF466357; AAO17320.1; -; mRNA.
DR EMBL; AP003981; BAC79683.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF21946.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02212.1; -; Genomic_DNA.
DR EMBL; CM000144; EAZ40350.1; -; Genomic_DNA.
DR EMBL; AK061685; BAG88056.1; -; mRNA.
DR EMBL; AK101897; BAG95278.1; -; mRNA.
DR RefSeq; XP_015644653.1; XM_015789167.1.
DR AlphaFoldDB; Q8GT95; -.
DR SMR; Q8GT95; -.
DR STRING; 4530.OS07T0568700-02; -.
DR PaxDb; Q8GT95; -.
DR PRIDE; Q8GT95; -.
DR EnsemblPlants; Os07t0568700-02; Os07t0568700-02; Os07g0568700.
DR GeneID; 4343645; -.
DR Gramene; Os07t0568700-02; Os07t0568700-02; Os07g0568700.
DR KEGG; osa:4343645; -.
DR eggNOG; ENOG502S4YE; Eukaryota.
DR HOGENOM; CLU_000288_18_22_1; -.
DR InParanoid; Q8GT95; -.
DR OMA; SPNCCAW; -.
DR OrthoDB; 1111550at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q8GT95; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0004857; F:enzyme inhibitor activity; IDA:Gramene.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR GO; GO:0048833; P:specification of floral organ number; IMP:Gramene.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR013210; LRR_N_plant-typ.
DR Pfam; PF13855; LRR_8; 2.
DR Pfam; PF08263; LRRNT_2; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Differentiation; Disulfide bond; Glycoprotein;
KW Leucine-rich repeat; Reference proteome; Repeat; Secreted; Signal.
FT SIGNAL 1..24
FT /evidence="ECO:0000255"
FT CHAIN 25..332
FT /note="Polygalacturonase inhibitor 1"
FT /id="PRO_0000023884"
FT REPEAT 72..96
FT /note="LRR 1"
FT /evidence="ECO:0000255"
FT REPEAT 97..118
FT /note="LRR 2"
FT /evidence="ECO:0000255"
FT REPEAT 119..142
FT /note="LRR 3"
FT /evidence="ECO:0000255"
FT REPEAT 143..166
FT /note="LRR 4"
FT /evidence="ECO:0000255"
FT REPEAT 167..192
FT /note="LRR 5"
FT /evidence="ECO:0000255"
FT REPEAT 193..215
FT /note="LRR 6"
FT /evidence="ECO:0000255"
FT REPEAT 216..236
FT /note="LRR 7"
FT /evidence="ECO:0000255"
FT REPEAT 237..259
FT /note="LRR 8"
FT /evidence="ECO:0000255"
FT REPEAT 260..283
FT /note="LRR 9"
FT /evidence="ECO:0000255"
FT REPEAT 284..310
FT /note="LRR 10"
FT /evidence="ECO:0000255"
FT CARBOHYD 131
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT DISULFID 27..58
FT /evidence="ECO:0000250|UniProtKB:P58822"
FT DISULFID 59..66
FT /evidence="ECO:0000250|UniProtKB:P58822"
FT DISULFID 298..320
FT /evidence="ECO:0000250|UniProtKB:P58822"
FT DISULFID 298..312
FT /evidence="ECO:0000250"
FT DISULFID 320..329
FT /evidence="ECO:0000250"
SQ SEQUENCE 332 AA; 35465 MW; C8F99A8D15061169 CRC64;
MASTASFMLA VLLAVAVAAA PARAVRCPPS DKQALMRVKQ SLGNPATLST WSLASADCCE
WDHVRCDEAG RVNNVFIDGA NDVRGQIPSA VAGLTALMSL SLFRLPGLSG PIPACLTALS
NLQFLTISHT NVSGVIPDSL ARIRSLDSVD LSHNSLTGPI PNSFSDLPNL RSLDLRSNKL
TGCIPAGLVQ GQFRSLILSY NQLTGPIPRD DAQDEINTVD LSHNRLTGDA SFLFAAGRPI
GKVDLSWNDL DFDLSKLVFP PELTYLDLSH NRIRGTVPRS LAALSTLQTL DLSYNRLCGP
LPRLHGVIRH GCKPYEHNQC AGGAPLGGCH QS
