PHAF1_ARATH
ID PHAF1_ARATH Reviewed; 410 AA.
AC Q9SD33; Q53YG9; Q8LD70; Q94C31;
DT 23-JAN-2002, integrated into UniProtKB/Swiss-Prot.
DT 29-MAY-2007, sequence version 2.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=PHAF1 protein At3g51130;
GN OrderedLocusNames=At3g51130; ORFNames=F24M12.170;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- INTERACTION:
CC Q9SD33; Q84MB2: TIFY8; NbExp=3; IntAct=EBI-25520212, EBI-4426557;
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9SD33-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9SD33-2; Sequence=VSP_025789;
CC -!- SIMILARITY: Belongs to the PHAF1 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM63377.1; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL132980; CAB62635.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78754.1; -; Genomic_DNA.
DR EMBL; AY037194; AAK59779.1; -; mRNA.
DR EMBL; BT002670; AAO11586.1; -; mRNA.
DR EMBL; AY086173; AAM63377.1; ALT_SEQ; mRNA.
DR PIR; T45744; T45744.
DR RefSeq; NP_566945.1; NM_114973.3. [Q9SD33-1]
DR AlphaFoldDB; Q9SD33; -.
DR BioGRID; 9595; 1.
DR IntAct; Q9SD33; 1.
DR STRING; 3702.AT3G51130.1; -.
DR PaxDb; Q9SD33; -.
DR PRIDE; Q9SD33; -.
DR ProteomicsDB; 234641; -. [Q9SD33-1]
DR EnsemblPlants; AT3G51130.1; AT3G51130.1; AT3G51130. [Q9SD33-1]
DR GeneID; 824277; -.
DR Gramene; AT3G51130.1; AT3G51130.1; AT3G51130. [Q9SD33-1]
DR KEGG; ath:AT3G51130; -.
DR Araport; AT3G51130; -.
DR TAIR; locus:2080873; AT3G51130.
DR eggNOG; KOG2819; Eukaryota.
DR HOGENOM; CLU_032056_0_0_1; -.
DR InParanoid; Q9SD33; -.
DR OMA; GCEQWEF; -.
DR OrthoDB; 709631at2759; -.
DR PhylomeDB; Q9SD33; -.
DR PRO; PR:Q9SD33; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SD33; baseline and differential.
DR Genevisible; Q9SD33; AT.
DR InterPro; IPR005373; PHAF1.
DR InterPro; IPR039156; PHAF1/BROMI.
DR PANTHER; PTHR13465; PTHR13465; 1.
DR PANTHER; PTHR13465:SF2; PTHR13465:SF2; 1.
DR Pfam; PF03676; UPF0183; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Reference proteome.
FT CHAIN 1..410
FT /note="PHAF1 protein At3g51130"
FT /id="PRO_0000221088"
FT VAR_SEQ 398..410
FT /note="KNGHIATITLFQS -> HFCNNPRFSNFDPCYILADC (in isoform
FT 2)"
FT /evidence="ECO:0000303|PubMed:14593172"
FT /id="VSP_025789"
SQ SEQUENCE 410 AA; 45682 MW; 3F0E3A40F8953DF7 CRC64;
MKDYSKIGDK LVMQRPRRRL EGTAMGATVF DLRPGVGIGP FSIGMPICEA FAQIEQQPNI
YDVVHVKYYD EDPLKLDVVI SFPDHGFHLR FDPWSQRLRL VEIFDVKRLQ MRYATSMIGG
PSTLATFVAV YALFGPTFPG IYDKERGIYS LFYPGLSFEF PIPNQYTDCC HDGEAALPLE
FPDGTTPVTC RVSIYDNSSD KKVGVGKLMD RASVPPLPPG SLYMEEVHVK PGKELYFTVG
GQHMPFGASP QDVWTELGRP CGIHPKQVDQ MVIHSASDPR PKTTICGDYF YNYFTRGLDI
LFDGETHKVK KFVLHTNYPG HADFNSYIKC NFVISAGADA AEANRSGNKI TPSTNWDQVK
EILGECGPAA IQTQGSTSNP FGSTYVYGYQ NVAFEVMKNG HIATITLFQS
