PHF13_MOUSE
ID PHF13_MOUSE Reviewed; 296 AA.
AC Q8K2W6;
DT 15-AUG-2003, integrated into UniProtKB/Swiss-Prot.
DT 15-AUG-2003, sequence version 2.
DT 03-AUG-2022, entry version 132.
DE RecName: Full=PHD finger protein 13;
GN Name=Phf13;
OS Mus musculus (Mouse).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
OX NCBI_TaxID=10090;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=FVB/N; TISSUE=Mammary gland;
RX PubMed=15489334; DOI=10.1101/gr.2596504;
RG The MGC Project Team;
RT "The status, quality, and expansion of the NIH full-length cDNA project:
RT the Mammalian Gene Collection (MGC).";
RL Genome Res. 14:2121-2127(2004).
CC -!- FUNCTION: Modulates chromatin structure. Required for normal chromosome
CC condensation during the early stages of mitosis. Required for normal
CC chromosome separation during mitosis (By similarity). {ECO:0000250}.
CC -!- SUBUNIT: Interacts with histone H3 that is trimethylated at 'Lys-4'
CC (H3K4me3). Interacts with GSK3B (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. Nucleus, nucleoplasm
CC {ECO:0000250}. Note=Predominantly bound to chromatin, but a minor
CC proportion is also detected in the nucleoplasm. {ECO:0000250}.
CC -!- PTM: Subject to proteasomal degradation. Stable when bound to
CC chromatin. The soluble form is rapidly degraded (By similarity).
CC {ECO:0000250}.
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DR EMBL; BC029632; AAH29632.2; -; mRNA.
DR EMBL; BC059282; AAH59282.1; -; mRNA.
DR CCDS; CCDS51388.1; -.
DR RefSeq; NP_766293.2; NM_172705.2.
DR AlphaFoldDB; Q8K2W6; -.
DR SMR; Q8K2W6; -.
DR STRING; 10090.ENSMUSP00000062590; -.
DR iPTMnet; Q8K2W6; -.
DR PhosphoSitePlus; Q8K2W6; -.
DR PaxDb; Q8K2W6; -.
DR PRIDE; Q8K2W6; -.
DR ProteomicsDB; 289493; -.
DR Antibodypedia; 13124; 142 antibodies from 20 providers.
DR Ensembl; ENSMUST00000055688; ENSMUSP00000062590; ENSMUSG00000047777.
DR GeneID; 230936; -.
DR KEGG; mmu:230936; -.
DR UCSC; uc008vyx.2; mouse.
DR CTD; 148479; -.
DR MGI; MGI:2446217; Phf13.
DR VEuPathDB; HostDB:ENSMUSG00000047777; -.
DR eggNOG; KOG1844; Eukaryota.
DR GeneTree; ENSGT00530000063882; -.
DR HOGENOM; CLU_047981_0_0_1; -.
DR InParanoid; Q8K2W6; -.
DR OMA; HAFQSEG; -.
DR OrthoDB; 982722at2759; -.
DR PhylomeDB; Q8K2W6; -.
DR TreeFam; TF331373; -.
DR BioGRID-ORCS; 230936; 3 hits in 74 CRISPR screens.
DR ChiTaRS; Phf13; mouse.
DR PRO; PR:Q8K2W6; -.
DR Proteomes; UP000000589; Chromosome 4.
DR RNAct; Q8K2W6; protein.
DR Bgee; ENSMUSG00000047777; Expressed in secondary oocyte and 248 other tissues.
DR ExpressionAtlas; Q8K2W6; baseline and differential.
DR Genevisible; Q8K2W6; MM.
DR GO; GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; ISS:UniProtKB.
DR GO; GO:0003682; F:chromatin binding; ISS:UniProtKB.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR GO; GO:0007059; P:chromosome segregation; ISS:UniProtKB.
DR GO; GO:0000278; P:mitotic cell cycle; ISS:UniProtKB.
DR GO; GO:0007076; P:mitotic chromosome condensation; ISS:UniProtKB.
DR CDD; cd15632; PHD_PHF13; 1.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR041947; PHD_PHF13.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; SSF57903; 1.
PE 2: Evidence at transcript level;
KW Cell cycle; Cell division; Chromatin regulator; DNA condensation;
KW Metal-binding; Mitosis; Nucleus; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..296
FT /note="PHD finger protein 13"
FT /id="PRO_0000059305"
FT ZN_FING 230..276
FT /note="PHD-type"
FT REGION 51..73
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 97..126
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 145..183
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 237..244
FT /note="Interaction with trimethylated histone H3 (H3K4)"
FT /evidence="ECO:0000250"
FT MOTIF 106..123
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000250"
FT COMPBIAS 53..73
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 147..183
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 296 AA; 33424 MW; FE89C6ABFB6D57C8 CRC64;
MDSDSCAAAF HPEEYSPTCK RRRTVEDFNK FCTFVLAYAG YIPYPKEELP LRSSPSPANS
TAGTIDSDGW DTGFSDITPS VPDRCFSHLQ PSLLQRAKPS NYLLDRKTTD KLKKKKRRKR
RDSDIPVKEG FRESLLKLEA ADPYVETPSS PTMQDIPQAS ADPCSGWDSD TPSSGSCATV
SPDQVTEIKT EGKRTIVRQG KQVVFRDEDS TGNDEDIMVD SDDDSWDLVT CFCMKPFAGR
PMIECNECHT WIHLSCAKIR KSNVPEVFVC QKCRDSKFDI RRSNRSRMGS RKLFLD