PHF5A_ARATH
ID PHF5A_ARATH Reviewed; 110 AA.
AC P0DI19; O80873;
DT 16-MAY-2012, integrated into UniProtKB/Swiss-Prot.
DT 16-MAY-2012, sequence version 1.
DT 03-AUG-2022, entry version 52.
DE RecName: Full=PHD finger-like domain-containing protein 5A;
GN OrderedLocusNames=At2g30000; ORFNames=F23F1.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PHF5 family. {ECO:0000305}.
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DR EMBL; AC004680; AAC31852.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08334.1; -; Genomic_DNA.
DR EMBL; AK118482; BAC43086.1; -; mRNA.
DR EMBL; BT004694; AAO42940.1; -; mRNA.
DR EMBL; AY087478; AAM65022.1; -; mRNA.
DR PIR; T02485; T02485.
DR RefSeq; NP_001077473.1; NM_001084004.1.
DR RefSeq; NP_001184928.1; NM_001197999.1.
DR RefSeq; NP_001318938.1; NM_001331682.1.
DR RefSeq; NP_001321285.1; NM_001331684.1.
DR RefSeq; NP_001321286.1; NM_001331683.1.
DR RefSeq; NP_563782.1; NM_100591.4.
DR RefSeq; NP_565691.1; NM_128555.4.
DR AlphaFoldDB; P0DI19; -.
DR SMR; P0DI19; -.
DR BioGRID; 22469; 5.
DR BioGRID; 2901; 5.
DR STRING; 3702.AT1G07170.3; -.
DR PaxDb; P0DI19; -.
DR PRIDE; P0DI19; -.
DR EnsemblPlants; AT1G07170.1; AT1G07170.1; AT1G07170.
DR EnsemblPlants; AT1G07170.2; AT1G07170.2; AT1G07170.
DR EnsemblPlants; AT1G07170.3; AT1G07170.3; AT1G07170.
DR EnsemblPlants; AT1G07170.4; AT1G07170.4; AT1G07170.
DR EnsemblPlants; AT1G07170.5; AT1G07170.5; AT1G07170.
DR EnsemblPlants; AT1G07170.6; AT1G07170.6; AT1G07170.
DR EnsemblPlants; AT2G30000.1; AT2G30000.1; AT2G30000.
DR GeneID; 817551; -.
DR GeneID; 837228; -.
DR Gramene; AT1G07170.1; AT1G07170.1; AT1G07170.
DR Gramene; AT1G07170.2; AT1G07170.2; AT1G07170.
DR Gramene; AT1G07170.3; AT1G07170.3; AT1G07170.
DR Gramene; AT1G07170.4; AT1G07170.4; AT1G07170.
DR Gramene; AT1G07170.5; AT1G07170.5; AT1G07170.
DR Gramene; AT1G07170.6; AT1G07170.6; AT1G07170.
DR Gramene; AT2G30000.1; AT2G30000.1; AT2G30000.
DR KEGG; ath:AT1G07170; -.
DR KEGG; ath:AT2G30000; -.
DR Araport; AT2G30000; -.
DR eggNOG; KOG1705; Eukaryota.
DR HOGENOM; CLU_110369_2_0_1; -.
DR InParanoid; P0DI19; -.
DR OMA; AYYCWEC; -.
DR OrthoDB; 1477492at2759; -.
DR PhylomeDB; P0DI19; -.
DR PRO; PR:P0DI19; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; P0DI19; baseline and differential.
DR Genevisible; P0DI19; AT.
DR GO; GO:0071011; C:precatalytic spliceosome; IBA:GO_Central.
DR GO; GO:0005689; C:U12-type spliceosomal complex; IBA:GO_Central.
DR GO; GO:0005686; C:U2 snRNP; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR InterPro; IPR005345; PHF5.
DR PANTHER; PTHR13120; PTHR13120; 1.
DR Pfam; PF03660; PHF5; 1.
DR PIRSF; PIRSF016468; PHF5; 1.
PE 3: Inferred from homology;
KW Reference proteome.
FT CHAIN 1..110
FT /note="PHD finger-like domain-containing protein 5A"
FT /id="PRO_0000417452"
SQ SEQUENCE 110 AA; 12429 MW; 5499867155B48E28 CRC64;
MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VICDSYVRPC TLVRICDECN YGSFQGRCVI
CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY ERKKYGFKKR
