PHF5B_ARATH
ID PHF5B_ARATH Reviewed; 110 AA.
AC Q0WMV8; O80873;
DT 16-MAY-2012, integrated into UniProtKB/Swiss-Prot.
DT 05-SEP-2006, sequence version 1.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=PHD finger-like domain-containing protein 5B;
GN OrderedLocusNames=At1g07170; ORFNames=F10K1.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PHF5 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF82203.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC067971; AAF82203.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28085.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28086.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28087.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58882.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58883.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58884.1; -; Genomic_DNA.
DR EMBL; BT008548; AAP40375.1; -; mRNA.
DR EMBL; BT008644; AAP40459.1; -; mRNA.
DR EMBL; AK229703; BAF01542.1; -; mRNA.
DR EMBL; AY088771; AAM67084.1; -; mRNA.
DR PIR; G86206; G86206.
DR RefSeq; NP_001077473.1; NM_001084004.1.
DR RefSeq; NP_001184928.1; NM_001197999.1.
DR RefSeq; NP_001318938.1; NM_001331682.1.
DR RefSeq; NP_001321285.1; NM_001331684.1.
DR RefSeq; NP_001321286.1; NM_001331683.1.
DR RefSeq; NP_563782.1; NM_100591.4.
DR RefSeq; NP_565691.1; NM_128555.4.
DR AlphaFoldDB; Q0WMV8; -.
DR SMR; Q0WMV8; -.
DR BioGRID; 22469; 5.
DR BioGRID; 2901; 5.
DR PRIDE; Q0WMV8; -.
DR EnsemblPlants; AT1G07170.1; AT1G07170.1; AT1G07170.
DR EnsemblPlants; AT1G07170.2; AT1G07170.2; AT1G07170.
DR EnsemblPlants; AT1G07170.3; AT1G07170.3; AT1G07170.
DR EnsemblPlants; AT1G07170.4; AT1G07170.4; AT1G07170.
DR EnsemblPlants; AT1G07170.5; AT1G07170.5; AT1G07170.
DR EnsemblPlants; AT1G07170.6; AT1G07170.6; AT1G07170.
DR EnsemblPlants; AT2G30000.1; AT2G30000.1; AT2G30000.
DR GeneID; 817551; -.
DR GeneID; 837228; -.
DR Gramene; AT1G07170.1; AT1G07170.1; AT1G07170.
DR Gramene; AT1G07170.2; AT1G07170.2; AT1G07170.
DR Gramene; AT1G07170.3; AT1G07170.3; AT1G07170.
DR Gramene; AT1G07170.4; AT1G07170.4; AT1G07170.
DR Gramene; AT1G07170.5; AT1G07170.5; AT1G07170.
DR Gramene; AT1G07170.6; AT1G07170.6; AT1G07170.
DR Gramene; AT2G30000.1; AT2G30000.1; AT2G30000.
DR KEGG; ath:AT1G07170; -.
DR KEGG; ath:AT2G30000; -.
DR Araport; AT1G07170; -.
DR HOGENOM; CLU_110369_2_0_1; -.
DR InParanoid; Q0WMV8; -.
DR OMA; AYYCWEC; -.
DR OrthoDB; 1477492at2759; -.
DR PhylomeDB; Q0WMV8; -.
DR PRO; PR:Q0WMV8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q0WMV8; baseline and differential.
DR Genevisible; Q0WMV8; AT.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR InterPro; IPR005345; PHF5.
DR PANTHER; PTHR13120; PTHR13120; 1.
DR Pfam; PF03660; PHF5; 1.
DR PIRSF; PIRSF016468; PHF5; 1.
PE 3: Inferred from homology;
KW Reference proteome.
FT CHAIN 1..110
FT /note="PHD finger-like domain-containing protein 5B"
FT /id="PRO_0000218720"
SQ SEQUENCE 110 AA; 12429 MW; 5499867155B48E28 CRC64;
MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VICDSYVRPC TLVRICDECN YGSFQGRCVI
CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY ERKKYGFKKR
