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PHF6_BOVIN
ID   PHF6_BOVIN              Reviewed;         365 AA.
AC   Q08DR0;
DT   29-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   31-OCT-2006, sequence version 1.
DT   03-AUG-2022, entry version 99.
DE   RecName: Full=PHD finger protein 6;
GN   Name=PHF6;
OS   Bos taurus (Bovine).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
OX   NCBI_TaxID=9913;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=Hereford; TISSUE=Placenta;
RG   NIH - Mammalian Gene Collection (MGC) project;
RL   Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Transcriptional regulator that associates with ribosomal RNA
CC       promoters and suppresses ribosomal RNA (rRNA) transcription.
CC       {ECO:0000250}.
CC   -!- SUBUNIT: Interacts with UBTF. Interacts with the NuRD complex component
CC       RBBP4 (via the nucleolar localization motif), the interaction mediates
CC       transcriptional repression activity (By similarity). {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. Nucleus, nucleolus
CC       {ECO:0000250}. Chromosome, centromere, kinetochore
CC       {ECO:0000250|UniProtKB:Q8IWS0}. Note=Nuclear, it particularly localizes
CC       to the nucleolus. {ECO:0000250}.
CC   -!- DOMAIN: The PHD-type zinc finger 1 mediates both nucleolar localization
CC       and interaction with UBTF. {ECO:0000250}.
CC   -!- DOMAIN: The ePHD2 domain folds as an integrated structural module
CC       comprizing the C2HC pre-PHD-type 2 zinc finger and the PHD-type 2 zinc
CC       finger. It mediates non-specific binding to dsDNA, but doesn't bind
CC       histones in contrast to many PHD-type zinc fingers.
CC       {ECO:0000250|UniProtKB:Q8IWS0}.
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DR   EMBL; BC123609; AAI23610.1; -; mRNA.
DR   RefSeq; NP_001069237.1; NM_001075769.1.
DR   RefSeq; XP_010819737.1; XM_010821435.1.
DR   RefSeq; XP_015325676.1; XM_015470190.1.
DR   AlphaFoldDB; Q08DR0; -.
DR   SMR; Q08DR0; -.
DR   STRING; 9913.ENSBTAP00000020218; -.
DR   Ensembl; ENSBTAT00000020218; ENSBTAP00000020218; ENSBTAG00000015196.
DR   GeneID; 518186; -.
DR   KEGG; bta:518186; -.
DR   CTD; 84295; -.
DR   VEuPathDB; HostDB:ENSBTAG00000015196; -.
DR   VGNC; VGNC:97297; PHF6.
DR   GeneTree; ENSGT00950000182865; -.
DR   InParanoid; Q08DR0; -.
DR   OMA; RRTYHYH; -.
DR   OrthoDB; 783078at2759; -.
DR   Proteomes; UP000009136; Chromosome X.
DR   Bgee; ENSBTAG00000015196; Expressed in nasopharynx and 112 other tissues.
DR   GO; GO:0000776; C:kinetochore; IEA:UniProtKB-KW.
DR   GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005654; C:nucleoplasm; IEA:Ensembl.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR   GO; GO:0042826; F:histone deacetylase binding; IBA:GO_Central.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0051219; F:phosphoprotein binding; IEA:Ensembl.
DR   GO; GO:0043021; F:ribonucleoprotein complex binding; IEA:Ensembl.
DR   GO; GO:0097110; F:scaffold protein binding; IEA:Ensembl.
DR   GO; GO:0015631; F:tubulin binding; IEA:Ensembl.
DR   GO; GO:0001835; P:blastocyst hatching; IEA:Ensembl.
DR   GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IEA:Ensembl.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   Gene3D; 3.30.40.10; -; 2.
DR   InterPro; IPR034732; EPHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   SMART; SM00249; PHD; 2.
DR   PROSITE; PS51805; EPHD; 2.
PE   2: Evidence at transcript level;
KW   Acetylation; Centromere; Chromosome; DNA-binding; Isopeptide bond;
KW   Kinetochore; Metal-binding; Nucleus; Phosphoprotein; Reference proteome;
KW   Repeat; Transcription; Transcription regulation; Ubl conjugation; Zinc;
KW   Zinc-finger.
FT   INIT_MET        1
FT                   /note="Removed"
FT                   /evidence="ECO:0000250|UniProtKB:Q8IWS0"
FT   CHAIN           2..365
FT                   /note="PHD finger protein 6"
FT                   /id="PRO_0000288798"
FT   ZN_FING         14..52
FT                   /note="C2HC pre-PHD-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01146"
FT   ZN_FING         80..132
FT                   /note="PHD-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01146"
FT   ZN_FING         209..249
FT                   /note="C2HC pre-PHD-type 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01146"
FT   ZN_FING         278..330
FT                   /note="PHD-type 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01146"
FT   REGION          14..132
FT                   /note="Extended PHD1 domain (ePHD1)"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01146"
FT   REGION          139..211
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          209..330
FT                   /note="Extended PHD2 domain (ePHD2)"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01146"
FT   REGION          330..365
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           13..16
FT                   /note="Nuclear localization signal"
FT                   /evidence="ECO:0000255"
FT   MOTIF           129..133
FT                   /note="Nuclear localization signal"
FT                   /evidence="ECO:0000255"
FT   MOTIF           157..169
FT                   /note="Nucleolar localization signal"
FT                   /evidence="ECO:0000255"
FT   COMPBIAS        139..158
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        182..205
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        330..350
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        351..365
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         2
FT                   /note="N-acetylserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q8IWS0"
FT   MOD_RES         138
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q8IWS0"
FT   MOD_RES         145
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q8IWS0"
FT   MOD_RES         155
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q8IWS0"
FT   MOD_RES         183
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9D4J7"
FT   MOD_RES         199
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q8IWS0"
FT   MOD_RES         358
FT                   /note="Phosphothreonine"
FT                   /evidence="ECO:0000250|UniProtKB:Q8IWS0"
FT   CROSSLNK        173
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:Q8IWS0"
FT   CROSSLNK        227
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:Q8IWS0"
SQ   SEQUENCE   365 AA;  41289 MW;  463F47908423BB83 CRC64;
     MSSSVEQKKG PTRQRKCGFC KSNRDKECGQ LLISENQKVA AHHKCMLFSS ALVSSHSDNE
     SLGGFSIEDV QKEIKRGTKL MCSLCHCPGA TIGCDVKTCH RTYHYHCALH DKAQIREKPS
     QGIYMVYCRK HKKTAHNSEA DLEESFNEHE LEPSSPKSKK KSRKGRPRKT NFKGLSEDTR
     STSSHGTDEM ESSSYRDRSP HRSSPSDTRP KCGFCHVGEE ENQARGKLHI FNAKKAAAHY
     KCMLFSSGTV QLTTTSRAEF GDFDIKTVLQ EIKRGKRMKC TLCSQPGATI GCEIKACVKT
     YHYHCGVQDK AKYIENMSRG IYKLYCKNHS GNDERDEEDE ERESKSRGKV EIDQQQLTQQ
     QLNGN
 
 
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