PHL5_ARATH
ID PHL5_ARATH Reviewed; 375 AA.
AC Q0WVU3; F4K587; Q9FG27;
DT 06-JUL-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-SEP-2006, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Myb family transcription factor PHL5 {ECO:0000305};
DE AltName: Full=Protein PHR1-LIKE 5 {ECO:0000305};
GN Name=PHL5 {ECO:0000305};
GN OrderedLocusNames=At5g06800 {ECO:0000312|Araport:AT5G06800};
GN ORFNames=MPH15.16 {ECO:0000312|EMBL:BAB09814.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|EMBL:BAE98755.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-375 (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Cheuk R., Chen H., Kim C.J., Shinn P., Carninci P., Hayashizaki Y.,
RA Ishida J., Kamiya A., Kawai J., Narusaka M., Sakurai T., Satou M., Seki M.,
RA Shinozaki K., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=11511543; DOI=10.1101/gad.204401;
RA Rubio V., Linhares F., Solano R., Martin A.C., Iglesias J., Leyva A.,
RA Paz-Ares J.;
RT "A conserved MYB transcription factor involved in phosphate starvation
RT signaling both in vascular plants and in unicellular algae.";
RL Genes Dev. 15:2122-2133(2001).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q0WVU3-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q0WVU3-2; Sequence=VSP_058431, VSP_058432;
CC -!- SIMILARITY: Belongs to the MYB-CC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB09814.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AP002032; BAB09814.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002688; AED91067.1; -; Genomic_DNA.
DR EMBL; AK226644; BAE98755.1; -; mRNA.
DR EMBL; BT012658; AAT06477.1; -; mRNA.
DR RefSeq; NP_196298.2; NM_120763.4. [Q0WVU3-1]
DR AlphaFoldDB; Q0WVU3; -.
DR SMR; Q0WVU3; -.
DR STRING; 3702.AT5G06800.1; -.
DR PaxDb; Q0WVU3; -.
DR PRIDE; Q0WVU3; -.
DR EnsemblPlants; AT5G06800.1; AT5G06800.1; AT5G06800. [Q0WVU3-1]
DR GeneID; 830570; -.
DR Gramene; AT5G06800.1; AT5G06800.1; AT5G06800. [Q0WVU3-1]
DR KEGG; ath:AT5G06800; -.
DR Araport; AT5G06800; -.
DR TAIR; locus:2170199; AT5G06800.
DR eggNOG; ENOG502QW8T; Eukaryota.
DR InParanoid; Q0WVU3; -.
DR PRO; PR:Q0WVU3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q0WVU3; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR025756; Myb_CC_LHEQLE.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR044848; PHR1-like.
DR PANTHER; PTHR31314; PTHR31314; 1.
DR Pfam; PF14379; Myb_CC_LHEQLE; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Coiled coil; DNA-binding; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..375
FT /note="Myb family transcription factor PHL5"
FT /id="PRO_0000436862"
FT DOMAIN 189..249
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 220..245
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 159..178
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 279..299
FT /evidence="ECO:0000255"
FT MOTIF 292..297
FT /note="LHEQLE"
FT /evidence="ECO:0000305"
FT VAR_SEQ 298..302
FT /note="IQRNL -> VSYKM (in isoform 2)"
FT /id="VSP_058431"
FT VAR_SEQ 303..375
FT /note="Missing (in isoform 2)"
FT /id="VSP_058432"
SQ SEQUENCE 375 AA; 42703 MW; E890FB8DCFB6EAC2 CRC64;
MMDNINFEFS NASQGSRLQL QQQPPQPFNL QDLNMIQYNQ PSSPWTTETF SGLTPYDCTA
NQSFPVQCSS SKPYPSSFHP YHHQSSDSPS LDQSVSMIPM QPLPDQYMKP LYQRSCSNDF
AATNASSASY SLSFEASHDP QELCRRTYSN SNVTHLNFTS SQHQPKQSHP RFSSPPSFSI
HGGSMAPNCV NKTRIRWTQD LHEKFVECVN RLGGADKATP KAILKRMDSD GLTIFHVKSH
LQKYRIAKYM PESQEGKFEK RACAKELSQL DTRTGVQIKE ALQLQLDVQR HLHEQLEIQR
NLQLRIEEQG KQLKMMMEQQ QKNKESLLKK LPDAEASLSL LDPHIHSPPS PFLVHDAEAL
MLTSYEDTQL QSTKS
