PHR1_ORYSJ
ID PHR1_ORYSJ Reviewed; 428 AA.
AC Q10LZ1;
DT 06-JUL-2016, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Protein PHOSPHATE STARVATION RESPONSE 1 {ECO:0000303|PubMed:18263782};
DE Short=OsPHR1 {ECO:0000303|PubMed:18263782};
GN Name=PHR1 {ECO:0000303|PubMed:18263782};
GN OrderedLocusNames=Os03g0329900 {ECO:0000312|EMBL:BAF11920.1},
GN LOC_Os03g21240 {ECO:0000312|EMBL:ABF95748.1};
GN ORFNames=OsJ_10705 {ECO:0000312|EMBL:EEE58994.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000312|EMBL:ABF95748.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, LACK OF INDUCTION BY
RP PHOSPHATE, SUBCELLULAR LOCATION, AND FUNCTION.
RX PubMed=18263782; DOI=10.1104/pp.107.111443;
RA Zhou J., Jiao F., Wu Z., Li Y., Wang X., He X., Zhong W., Wu P.;
RT "OsPHR2 is involved in phosphate-starvation signaling and excessive
RT phosphate accumulation in shoots of plants.";
RL Plant Physiol. 146:1673-1686(2008).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP FUNCTION, GENE FAMILY, NOMENCLATURE, DEVELOPMENTAL STAGE, TISSUE
RP SPECIFICITY, AND LACK OF INDUCTION BY PHOSPHATE.
RX PubMed=26082401; DOI=10.1104/pp.15.00736;
RA Guo M., Ruan W., Li C., Huang F., Zeng M., Liu Y., Yu Y., Ding X., Wu Y.,
RA Wu Z., Mao C., Yi K., Wu P., Mo X.;
RT "Integrative Comparison of the Role of the PHOSPHATE RESPONSE1 Subfamily in
RT Phosphate Signaling and Homeostasis in Rice.";
RL Plant Physiol. 168:1762-1776(2015).
CC -!- FUNCTION: Transcription factor involved in phosphate starvation
CC signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an
CC imperfect palindromic sequence 5'-GNATATNC-3', to promote the
CC expression of inorganic phosphate (Pi) starvation-responsive genes
CC (PubMed:26082401). Functionally redundant with PHR2 and PHR3 in
CC regulating Pi starvation response and Pi homeostasis (PubMed:26082401).
CC {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:18263782}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, stems, leaves and fruits
CC (PubMed:18263782). Expressed in the root cap and the root vascular
CC tissues, in the stele of lateral roots, in the mestome sheath cells and
CC the phloem cells of the leaf, in pollen, vascular cylinder of the
CC anther and the veins of the lemma, palea and pistils, and in the xylem
CC and phloem regions of large vascular bundles in node I
CC (PubMed:26082401). {ECO:0000269|PubMed:18263782,
CC ECO:0000269|PubMed:26082401}.
CC -!- DEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth.
CC {ECO:0000269|PubMed:26082401}.
CC -!- INDUCTION: Not regulated by Pi starvation.
CC {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}.
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DR EMBL; DP000009; ABF95748.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11920.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84022.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE58994.1; -; Genomic_DNA.
DR EMBL; AK063486; BAG88728.1; -; mRNA.
DR EMBL; AK109510; BAG98784.1; -; mRNA.
DR RefSeq; XP_015632603.1; XM_015777117.1.
DR AlphaFoldDB; Q10LZ1; -.
DR SMR; Q10LZ1; -.
DR STRING; 4530.OS03T0329900-01; -.
DR PaxDb; Q10LZ1; -.
DR PRIDE; Q10LZ1; -.
DR EnsemblPlants; Os03t0329900-01; Os03t0329900-01; Os03g0329900.
DR GeneID; 4332726; -.
DR Gramene; Os03t0329900-01; Os03t0329900-01; Os03g0329900.
DR KEGG; osa:4332726; -.
DR eggNOG; ENOG502QXMH; Eukaryota.
DR HOGENOM; CLU_044541_0_0_1; -.
DR InParanoid; Q10LZ1; -.
DR OMA; ALLREWW; -.
DR OrthoDB; 812231at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR025756; Myb_CC_LHEQLE.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR044848; PHR1-like.
DR PANTHER; PTHR31314; PTHR31314; 1.
DR Pfam; PF14379; Myb_CC_LHEQLE; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..428
FT /note="Protein PHOSPHATE STARVATION RESPONSE 1"
FT /id="PRO_0000436714"
FT DOMAIN 213..273
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 244..269
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 1..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 168..219
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 345..428
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 15..32
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 168..218
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 345..370
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 384..409
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 428 AA; 46733 MW; 4ED76F36CCAF1EE5 CRC64;
MSSSLPILPK SLKDIPRSHN TQNILMPGQL PNDSMPLHQS ATQSSISHPR ASVVRSSYSA
MLGYAANPID SVSSHEGHFM AAPFISQSSN AEMLQYLCNN NTHGGHTVPT FFPAPACGAP
DYMDTITVPD NHTQSGSSTV TSDAAKQNEW WADIMNDDWK DILDATATDS QSKSMAQPSN
SAASQPAFNQ STSSHSGDIC PVTSPPPNNS NASASKQRMR WTPELHESFV HAVNKLGGSE
KATPKGVLKL MKVDGLTIYH VKSHLQKYRT ARYKPDLSEG KTQEGKTTDE LSLDLKASMD
LTEALRLQME VQKRLHEQLE IQRKLQLRIE EQGKYLQKMF EKQCKSSTQS VQDPSSGDTA
TPSEPSNSVD KDSEAALDPN RIGDNHPKNS TNVGANLKTA ATESPDSPVI ATDGSELPQE
KRRRVHES
