PHR3_ORYSJ
ID PHR3_ORYSJ Reviewed; 467 AA.
AC Q6YXZ4;
DT 06-JUL-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 142.
DE RecName: Full=Protein PHOSPHATE STARVATION RESPONSE 3 {ECO:0000303|PubMed:26082401};
DE Short=OsPHR3 {ECO:0000303|PubMed:26082401};
GN Name=PHR3 {ECO:0000303|PubMed:26082401};
GN OrderedLocusNames=Os02g0139000 {ECO:0000312|EMBL:BAF07755.1},
GN LOC_Os02g04640 {ECO:0000305};
GN ORFNames=OsJ_05314 {ECO:0000312|EMBL:EAZ21684.1},
GN OSJNBa0026E05.31 {ECO:0000312|EMBL:BAD10540.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000312|EMBL:BAD10540.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP FUNCTION, GENE FAMILY, NOMENCLATURE, DEVELOPMENTAL STAGE, TISSUE
RP SPECIFICITY, AND INDUCTION BY PHOSPHATE.
RX PubMed=26082401; DOI=10.1104/pp.15.00736;
RA Guo M., Ruan W., Li C., Huang F., Zeng M., Liu Y., Yu Y., Ding X., Wu Y.,
RA Wu Z., Mao C., Yi K., Wu P., Mo X.;
RT "Integrative Comparison of the Role of the PHOSPHATE RESPONSE1 Subfamily in
RT Phosphate Signaling and Homeostasis in Rice.";
RL Plant Physiol. 168:1762-1776(2015).
CC -!- FUNCTION: Transcription factor involved in phosphate starvation
CC signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic
CC sequence 5'-GNATATNC-3', to promote the expression of inorganic
CC phosphate (Pi) starvation-responsive genes (PubMed:26082401).
CC Functionally redundant with PHR1 and PHR2 in regulating Pi starvation
CC response and Pi homeostasis (PubMed:26082401).
CC {ECO:0000269|PubMed:26082401}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- TISSUE SPECIFICITY: Expressed in the root cap and in the exodermis of
CC the root, in the root tip of lateral roots, in the mesophyll cells of
CC the leaf, in pollen, vascular cylinder of the anther and the veins of
CC the lemma, palea and pistils, and in the xylem and phloem regions of
CC large vascular bundles, small vascular bundles and diffuse vascular
CC bundles in node I (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
CC -!- DEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth.
CC Increased expression in leaves before the booting stage.
CC {ECO:0000269|PubMed:26082401}.
CC -!- INDUCTION: Up-regulated under Pi starvation conditions.
CC {ECO:0000269|PubMed:26082401}.
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DR EMBL; AP005647; BAD10540.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF07755.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS76898.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ21684.1; -; Genomic_DNA.
DR EMBL; AK065704; BAG89629.1; -; mRNA.
DR RefSeq; XP_015627390.1; XM_015771904.1.
DR RefSeq; XP_015627391.1; XM_015771905.1.
DR AlphaFoldDB; Q6YXZ4; -.
DR SMR; Q6YXZ4; -.
DR STRING; 4530.OS02T0139000-01; -.
DR PaxDb; Q6YXZ4; -.
DR PRIDE; Q6YXZ4; -.
DR EnsemblPlants; Os02t0139000-01; Os02t0139000-01; Os02g0139000.
DR GeneID; 4328249; -.
DR Gramene; Os02t0139000-01; Os02t0139000-01; Os02g0139000.
DR KEGG; osa:4328249; -.
DR eggNOG; ENOG502QSXE; Eukaryota.
DR HOGENOM; CLU_045049_1_0_1; -.
DR InParanoid; Q6YXZ4; -.
DR OMA; MAHTCTA; -.
DR OrthoDB; 929612at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR025756; Myb_CC_LHEQLE.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR044848; PHR1-like.
DR PANTHER; PTHR31314; PTHR31314; 1.
DR Pfam; PF14379; Myb_CC_LHEQLE; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..467
FT /note="Protein PHOSPHATE STARVATION RESPONSE 3"
FT /id="PRO_0000436716"
FT DOMAIN 262..322
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 293..318
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 227..266
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 327..353
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 400..467
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 228..265
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 400..414
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 417..431
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 440..467
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 467 AA; 51875 MW; 2F11B73DCAD8439E CRC64;
MSTQSVIAVK QFSGPDKIAQ AYTVPQPSAH VLSNANYDYD LCGSTNSTSL SCAIQSSNIK
TESISSSSLP KILPFSTDSN GESSLSRMSQ AEFSDPILSS SSTFCTSLYT SSPMNSGSCR
KTGYLPFLPQ PPKCEQQQNS AGQSSSSLML LDADLRNSGH ADDEHTDDLK DFLNLSSDCS
FHGKCSAMAY NEQMEFQFLS EQLGIAISNN EESPRLDDIY DRPPQLMSLP VSSCSDQEDL
QDARSPAKVQ LSSSRSSSGT ASCNKPRLRW TPELHERFVD AVNKLEGPEK ATPKGVLKLM
KVEGLTIYHI KSHLQKYRLA KYLPETKEDK KQEEKKTKSV ANGNDHAKKK SAQMAEALRM
QMEVQKQLHE QLEVQRQLQL RIEEHARYLQ KILEEQQKAR ESISSMTSTT EGESPEFAPM
EKTEDKAETS SAPLSKCRIT DTDAECHSKV DNKKTKPQAD LEMVHDE
