PHYK1_ORYSJ
ID PHYK1_ORYSJ Reviewed; 314 AA.
AC Q7XR51;
DT 07-MAR-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 85.
DE RecName: Full=Probable phytol kinase 1, chloroplastic;
DE EC=2.7.1.182;
DE Flags: Precursor;
GN OrderedLocusNames=Os04g0670700, LOC_Os04g57500; ORFNames=OSJNBa0043A12.34;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 205-314.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP IDENTIFICATION.
RX PubMed=16361393; DOI=10.1105/tpc.105.037077;
RA Valentin H.E., Lincoln K., Moshiri F., Jensen P.K., Qi Q., Venkatesh T.V.,
RA Karunanandaa B., Baszis S.R., Norris S.R., Savidge B., Gruys K.J.,
RA Last R.L.;
RT "The Arabidopsis vitamin E pathway gene5-1 mutant reveals a critical role
RT for phytol kinase in seed tocopherol biosynthesis.";
RL Plant Cell 18:212-224(2006).
CC -!- FUNCTION: Involved in the activation and reutilization of phytol from
CC chlorophyll degradation in plant metabolism, including tocopherol
CC biosynthesis. Catalyzes the conversion of phytol to phytol
CC monophosphate (PMP) (By similarity). {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=CTP + phytol = CDP + H(+) + phytyl phosphate;
CC Xref=Rhea:RHEA:38055, ChEBI:CHEBI:15378, ChEBI:CHEBI:17327,
CC ChEBI:CHEBI:37563, ChEBI:CHEBI:58069, ChEBI:CHEBI:75483;
CC EC=2.7.1.182;
CC -!- PATHWAY: Cofactor biosynthesis; tocopherol biosynthesis.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast membrane {ECO:0000305};
CC Multi-pass membrane protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the polyprenol kinase family. {ECO:0000305}.
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DR EMBL; AL606619; CAE02829.1; -; Genomic_DNA.
DR EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AK063069; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015637046.1; XM_015781560.1.
DR AlphaFoldDB; Q7XR51; -.
DR STRING; 4530.OS04T0670700-01; -.
DR PaxDb; Q7XR51; -.
DR PRIDE; Q7XR51; -.
DR GeneID; 4337355; -.
DR KEGG; osa:4337355; -.
DR eggNOG; KOG4453; Eukaryota.
DR InParanoid; Q7XR51; -.
DR OrthoDB; 1323987at2759; -.
DR UniPathway; UPA00160; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q7XR51; OS.
DR GO; GO:0031969; C:chloroplast membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016301; F:kinase activity; IBA:GO_Central.
DR GO; GO:0010276; F:phytol kinase activity; IBA:GO_Central.
DR GO; GO:0016310; P:phosphorylation; IEA:UniProtKB-KW.
DR GO; GO:0010189; P:vitamin E biosynthetic process; IBA:GO_Central.
DR InterPro; IPR039606; Phytol/farnesol_kinase.
DR PANTHER; PTHR32523; PTHR32523; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Kinase; Membrane; Plastid; Reference proteome; Transferase;
KW Transit peptide; Transmembrane; Transmembrane helix.
FT TRANSIT 1..62
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 63..314
FT /note="Probable phytol kinase 1, chloroplastic"
FT /id="PRO_0000226598"
FT TRANSMEM 72..91
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 111..131
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 135..155
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 181..201
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 234..254
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 266..286
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 294..314
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 314 AA; 33391 MW; 97E941B926576CF8 CRC64;
MAAAARPVDV VRHFPCSSSV AASSSLLLSR SKSRLASPAA AAASSMRRRL VLGVGAAAAP
AVAALAASAT PAALRDCAAT LLITAGAYSL VRAFDGLTAR RLIEQNLSRK IVHVLSGVLF
MSSWPLFSNS TEARFFAAIV PLLNCIRLLT YGLRLSTDEA LVKSVTREGK PEELLRGPLY
YVIVLLVSVL VFWRQSPIGI VSLSMMSGGD GFADIVGRRY GSAKLPFNEN KSWIGSISMF
ISGFLLSALM LFYFSCLGYF TVCWDLALGK LALVALAATV VECIPVNDVV DDNISVPLAT
MLAAYLLFGY SSCC
