PIA1_ARATH
ID PIA1_ARATH Reviewed; 175 AA.
AC Q9FF09; Q9SDA0;
DT 10-MAY-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 139.
DE RecName: Full=Phytochrome-interacting ankyrin-repeat protein 1 {ECO:0000303|PubMed:21395597};
DE Contains:
DE RecName: Full=Protein ANK6-like, mitochondrial {ECO:0000305};
GN Name=PIA1 {ECO:0000303|PubMed:21395597};
GN OrderedLocusNames=At5g07840 {ECO:0000312|Araport:AT5G07840};
GN ORFNames=F13G24.40 {ECO:0000312|EMBL:CAB62596.1},
GN MXM12.8 {ECO:0000312|EMBL:BAB09948.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP DISRUPTION PHENOTYPE.
RC STRAIN=cv. Columbia;
RX PubMed=21395597; DOI=10.1111/j.1399-3054.2011.01468.x;
RA Yoo J., Shin D.H., Cho M.-H., Kim T.-L., Bhoo S.H., Hahn T.-R.;
RT "An ankyrin repeat protein is involved in anthocyanin biosynthesis in
RT Arabidopsis.";
RL Physiol. Plantarum 142:314-325(2011).
CC -!- SUBUNIT: Interacts with phytochrome A (PHYA), both in Pr and Pfr forms.
CC {ECO:0000250|UniProtKB:Q9FNP4}.
CC -!- SUBCELLULAR LOCATION: [Phytochrome-interacting ankyrin-repeat protein
CC 1]: Cytoplasm {ECO:0000250|UniProtKB:Q9FNP4}. Nucleus
CC {ECO:0000250|UniProtKB:Q9FNP4}.
CC -!- SUBCELLULAR LOCATION: [Protein ANK6-like, mitochondrial]: Mitochondrion
CC {ECO:0000250|UniProtKB:Q9FNP4}.
CC -!- DISRUPTION PHENOTYPE: Normal hypocotyls length.
CC {ECO:0000269|PubMed:21395597}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB62596.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB005249; BAB09948.1; -; Genomic_DNA.
DR EMBL; AL133421; CAB62596.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED91211.1; -; Genomic_DNA.
DR EMBL; AF428380; AAL16148.1; -; mRNA.
DR EMBL; AY125541; AAM78051.1; -; mRNA.
DR EMBL; AK227033; BAE99094.1; -; mRNA.
DR PIR; T45609; T45609.
DR RefSeq; NP_568184.1; NM_120866.1.
DR AlphaFoldDB; Q9FF09; -.
DR SMR; Q9FF09; -.
DR IntAct; Q9FF09; 7.
DR STRING; 3702.AT5G07840.1; -.
DR PaxDb; Q9FF09; -.
DR PRIDE; Q9FF09; -.
DR EnsemblPlants; AT5G07840.1; AT5G07840.1; AT5G07840.
DR GeneID; 830677; -.
DR Gramene; AT5G07840.1; AT5G07840.1; AT5G07840.
DR KEGG; ath:AT5G07840; -.
DR Araport; AT5G07840; -.
DR TAIR; locus:2142783; AT5G07840.
DR eggNOG; KOG0504; Eukaryota.
DR HOGENOM; CLU_000134_45_8_1; -.
DR InParanoid; Q9FF09; -.
DR OMA; SRRMRIT; -.
DR OrthoDB; 1514637at2759; -.
DR PRO; PR:Q9FF09; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FF09; baseline and differential.
DR GO; GO:0005737; C:cytoplasm; ISS:UniProtKB.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; ISS:UniProtKB.
DR GO; GO:0010313; F:phytochrome binding; ISS:UniProtKB.
DR Gene3D; 1.25.40.20; -; 1.
DR InterPro; IPR002110; Ankyrin_rpt.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR Pfam; PF12796; Ank_2; 1.
DR PRINTS; PR01415; ANKYRIN.
DR SMART; SM00248; ANK; 3.
DR SUPFAM; SSF48403; SSF48403; 1.
DR PROSITE; PS50297; ANK_REP_REGION; 1.
DR PROSITE; PS50088; ANK_REPEAT; 3.
PE 2: Evidence at transcript level;
KW ANK repeat; Cytoplasm; Mitochondrion; Nucleus; Reference proteome; Repeat.
FT CHAIN 1..175
FT /note="Phytochrome-interacting ankyrin-repeat protein 1"
FT /id="PRO_0000439864"
FT CHAIN 29..175
FT /note="Protein ANK6-like, mitochondrial"
FT /evidence="ECO:0000255"
FT /id="PRO_0000439865"
FT REPEAT 30..59
FT /note="ANK 1"
FT /evidence="ECO:0000255"
FT REPEAT 67..96
FT /note="ANK 2"
FT /evidence="ECO:0000255"
FT REPEAT 102..131
FT /note="ANK 3"
FT /evidence="ECO:0000255"
SQ SEQUENCE 175 AA; 19257 MW; 8ADEA764C71C0E3C CRC64;
MLQEQPVALS FRPNSFRRRS METGVDRDDR GWTQLHIKAR EGDLKAVKEL LDQGADVNAL
ACGPKSKGMT PLHLAAKGGH IEVMDLLLER GANMEARTSG ACGWTPLHAA AKERKREAVK
FLVGNGAFLP DDITDSRFNP PVQYCHGLEW AYEERKKLSE DTSLSCGDTS CSSAN
