PIL15_ORYSJ
ID PIL15_ORYSJ Reviewed; 637 AA.
AC Q0JNI9; A0A0P0V1Q1; B7ESW7; Q5NAE0;
DT 20-JUN-2018, integrated into UniProtKB/Swiss-Prot.
DT 13-OCT-2009, sequence version 2.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 {ECO:0000303|PubMed:17485859};
DE Short=OsPIL15 {ECO:0000303|PubMed:17485859};
DE Short=PIF-like protein 15 {ECO:0000305};
DE AltName: Full=Basic helix-loop-helix protein 105 {ECO:0000303|PubMed:16896230};
DE Short=OsbHLH105 {ECO:0000303|PubMed:16896230};
GN Name=PIL15 {ECO:0000303|PubMed:17485859};
GN Synonyms=BHLH105 {ECO:0000303|PubMed:16896230};
GN OrderedLocusNames=Os01g0286100 {ECO:0000312|EMBL:BAF04689.2},
GN LOC_Os01g18290 {ECO:0000305};
GN ORFNames=P0498A12.33 {ECO:0000312|EMBL:BAD81566.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16896230; DOI=10.1104/pp.106.080580;
RA Li X., Duan X., Jiang H., Sun Y., Tang Y., Yuan Z., Guo J., Liang W.,
RA Chen L., Yin J., Ma H., Wang J., Zhang D.;
RT "Genome-wide analysis of basic/helix-loop-helix transcription factor family
RT in rice and Arabidopsis.";
RL Plant Physiol. 141:1167-1184(2006).
RN [6]
RP FUNCTION, AND INDUCTION.
RX PubMed=17485859; DOI=10.1271/bbb.60643;
RA Nakamura Y., Kato T., Yamashino T., Murakami M., Mizuno T.;
RT "Characterization of a set of phytochrome-interacting factor-like bHLH
RT proteins in Oryza sativa.";
RL Biosci. Biotechnol. Biochem. 71:1183-1191(2007).
RN [7]
RP INTERACTION WITH LF AND PRR1, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. Zhonghua 11;
RX PubMed=21549224; DOI=10.1016/j.nbt.2011.04.006;
RA Zhao X.L., Shi Z.Y., Peng L.T., Shen G.Z., Zhang J.L.;
RT "An atypical HLH protein OsLF in rice regulates flowering time and
RT interacts with OsPIL13 and OsPIL15.";
RL New Biotechnol. 28:788-797(2011).
CC -!- FUNCTION: Transcription factor that may act as negative regulator of
CC phyB-dependent light signal transduction.
CC {ECO:0000269|PubMed:17485859}.
CC -!- SUBUNIT: Interacts with LF and PRR1. {ECO:0000269|PubMed:21549224}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00981,
CC ECO:0000269|PubMed:21549224}.
CC -!- INDUCTION: Down-regulated by light in dark-grown etiolated seedlings.
CC {ECO:0000269|PubMed:17485859}.
CC -!- SIMILARITY: Belongs to the bHLH protein family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD81566.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS71627.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003020; BAD81566.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008207; BAF04689.2; -; Genomic_DNA.
DR EMBL; AP014957; BAS71627.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK102252; BAG95464.1; -; mRNA.
DR RefSeq; XP_015619034.1; XM_015763548.1.
DR AlphaFoldDB; Q0JNI9; -.
DR SMR; Q0JNI9; -.
DR STRING; 4530.OS01T0286100-01; -.
DR PRIDE; Q0JNI9; -.
DR EnsemblPlants; Os01t0286100-01; Os01t0286100-01; Os01g0286100.
DR GeneID; 4327916; -.
DR Gramene; Os01t0286100-01; Os01t0286100-01; Os01g0286100.
DR eggNOG; ENOG502QV9I; Eukaryota.
DR HOGENOM; CLU_014289_0_0_1; -.
DR InParanoid; Q0JNI9; -.
DR OrthoDB; 583799at2759; -.
DR PlantReactome; R-OSA-8933811; Circadian rhythm.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0090229; P:negative regulation of red or far-red light signaling pathway; IDA:UniProtKB.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:UniProtKB.
DR Gene3D; 4.10.280.10; -; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR InterPro; IPR044273; PIF3-like.
DR PANTHER; PTHR46807; PTHR46807; 1.
DR Pfam; PF00010; HLH; 1.
DR SMART; SM00353; HLH; 1.
DR SUPFAM; SSF47459; SSF47459; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..637
FT /note="Transcription factor PHYTOCHROME INTERACTING FACTOR-
FT LIKE 15"
FT /id="PRO_0000444470"
FT DOMAIN 384..433
FT /note="bHLH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 35..54
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 146..213
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 356..397
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 384..397
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 398..433
FT /note="Helix-loop-helix motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 601..637
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 147..191
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 366..397
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 601..625
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 637 AA; 66589 MW; 7D4D3AE9F41B988B CRC64;
MSDGNDFAEL LWENGQAVVH GRKKHPQPAF PPFGFFGGTG GGGGGSSSRA QERQPGGIDA
FAKVGGGFGA LGMAPAVHDF ASGFGATTQD NGDDDTVPWI HYPIIDDEDA AAPAALAAAD
YGSDFFSELQ AAAAAAAAAA PPTDLASLPA SNHNGATNNR NAPVATTTTR EPSKESHGGL
SVPTTRAEPQ PQPQLAAAKL PRSSGSGGGE GVMNFSLFSR PAVLARATLE SAQRTQGTDN
KASNVTASNR VESTVVQTAS GPRSAPAFAD QRAAAWPPQP KEMPFASTAA APMAPAVNLH
HEMGRDRAGR TMPVHKTEAR KAPEATVATS SVCSGNGAGS DELWRQQKRK CQAQAECSAS
QDDDLDDEPG VLRKSGTRST KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA
SMLDEAIEYL KTLQLQVQMM SMGTGLCIPP MLLPTAMQHL QIPPMAHFPH LGMGLGYGMG
VFDMSNTGAL QMPPMPGAHF PCPMIPGASP QGLGIPGTST MPMFGVPGQT IPSSASSVPP
FASLAGLPVR PSGVPQVSGA MANMVQDQQQ GIANQQQQCL NKEAIQGANP GDSQMQIIMQ
GDNENFRIPS SAQTKSSQFS DGTGKGTNAR ERDGAET
