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PIN1B_ORYSJ
ID   PIN1B_ORYSJ             Reviewed;         554 AA.
AC   P0C0X5; D5A7I6; Q2RAU7;
DT   10-JAN-2006, integrated into UniProtKB/Swiss-Prot.
DT   10-JAN-2006, sequence version 1.
DT   03-AUG-2022, entry version 92.
DE   RecName: Full=Probable auxin efflux carrier component 1b {ECO:0000305};
DE            Short=OsPIN1b {ECO:0000303|PubMed:16085936};
DE   AltName: Full=OsPIN1c {ECO:0000303|PubMed:19825657};
GN   Name=PIN1B {ECO:0000303|PubMed:16085936};
GN   OrderedLocusNames=Os11g0137000 {ECO:0000312|EMBL:BAT12573.1},
GN   LOC_Os11g04190 {ECO:0000305};
GN   ORFNames=OsJ_32878 {ECO:0000312|EMBL:EEE51610.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [7]
RP   IDENTIFICATION, AND TISSUE SPECIFICITY.
RX   DOI=10.1016/j.plantsci.2010.02.018;
RA   Miyashita Y., Takasugi T., Ito Y.;
RT   "Identification and expression analysis of PIN genes in rice.";
RL   Plant Sci. 178:424-428(2010).
RN   [8]
RP   NOMENCLATURE.
RX   PubMed=16085936; DOI=10.1093/pcp/pci183;
RA   Xu M., Zhu L., Shou H., Wu P.;
RT   "A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root
RT   emergence and tillering in rice.";
RL   Plant Cell Physiol. 46:1674-1681(2005).
RN   [9]
RP   TISSUE SPECIFICITY.
RX   PubMed=19825657; DOI=10.1093/mp/ssp023;
RA   Wang J.R., Hu H., Wang G.H., Li J., Chen J.Y., Wu P.;
RT   "Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and
RT   regulation by hormones.";
RL   Mol. Plant 2:823-831(2009).
CC   -!- FUNCTION: May act as a component of the auxin efflux carrier.
CC       {ECO:0000305}.
CC   -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC       protein {ECO:0000255}.
CC   -!- TISSUE SPECIFICITY: Expressed in roots and shoot apex (Ref.7).
CC       Expressed in roots, stem bases, stems, leaves and young panicles
CC       (PubMed:19825657). {ECO:0000269|PubMed:19825657, ECO:0000269|Ref.7}.
CC   -!- SIMILARITY: Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
CC       {ECO:0000305}.
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DR   EMBL; DP000010; ABA91350.1; -; Genomic_DNA.
DR   EMBL; AP008217; BAF27538.1; -; Genomic_DNA.
DR   EMBL; AP014967; BAT12573.1; -; Genomic_DNA.
DR   EMBL; CM000148; EEE51610.1; -; Genomic_DNA.
DR   EMBL; AK103181; -; NOT_ANNOTATED_CDS; mRNA.
DR   EMBL; BR000828; FAA00677.1; -; Genomic_DNA.
DR   RefSeq; XP_015616014.1; XM_015760528.1.
DR   AlphaFoldDB; P0C0X5; -.
DR   STRING; 4530.OS11T0137000-01; -.
DR   PaxDb; P0C0X5; -.
DR   PRIDE; P0C0X5; -.
DR   EnsemblPlants; Os11t0137000-01; Os11t0137000-01; Os11g0137000.
DR   GeneID; 4349716; -.
DR   Gramene; Os11t0137000-01; Os11t0137000-01; Os11g0137000.
DR   KEGG; osa:4349716; -.
DR   eggNOG; ENOG502QS61; Eukaryota.
DR   HOGENOM; CLU_019285_1_1_1; -.
DR   InParanoid; P0C0X5; -.
DR   OMA; EFYSVMA; -.
DR   OrthoDB; 337723at2759; -.
DR   PlantReactome; R-OSA-5608118; Auxin signalling.
DR   PlantReactome; R-OSA-8858053; Polar auxin transport.
DR   PlantReactome; R-OSA-9639861; Development of root hair.
DR   Proteomes; UP000000763; Chromosome 11.
DR   Proteomes; UP000007752; Chromosome 11.
DR   Proteomes; UP000059680; Chromosome 11.
DR   Genevisible; P0C0X5; OS.
DR   GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR   GO; GO:0010329; F:auxin efflux transmembrane transporter activity; IBA:GO_Central.
DR   GO; GO:0010315; P:auxin export across the plasma membrane; IBA:GO_Central.
DR   GO; GO:0010252; P:auxin homeostasis; IBA:GO_Central.
DR   GO; GO:0009926; P:auxin polar transport; IBA:GO_Central.
DR   GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR   InterPro; IPR014024; Auxin_eff_plant.
DR   InterPro; IPR004776; Mem_trans.
DR   Pfam; PF03547; Mem_trans; 1.
DR   TIGRFAMs; TIGR00946; 2a69; 1.
PE   2: Evidence at transcript level;
KW   Auxin signaling pathway; Glycoprotein; Membrane; Reference proteome;
KW   Transmembrane; Transmembrane helix; Transport.
FT   CHAIN           1..554
FT                   /note="Probable auxin efflux carrier component 1b"
FT                   /id="PRO_0000123789"
FT   TRANSMEM        7..27
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        39..59
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        69..89
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        101..121
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        136..156
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        415..435
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        439..459
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        476..496
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        499..519
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        534..554
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   REGION          214..240
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          275..298
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          352..385
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        217..240
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        357..375
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CARBOHYD        243
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CARBOHYD        369
FT                   /note="N-linked (GlcNAc...) asparagine"
FT                   /evidence="ECO:0000255"
FT   CONFLICT        479
FT                   /note="R -> G (in Ref. 6; AK103181)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   554 AA;  59270 MW;  7041229FF10F1986 CRC64;
     MITVVDLYHV LTAVVPLYVA MTLAYASVRW WRIFSPDQCS GINRFVALFA VPLLSFHFIS
     TNNPFAMNLR FLAADTLQKL IVLALLALWC RLSARGSLDW LITLFSLSTL PNTLVMGIPL
     LKGMYAAAAD VDSGSLMVQI VVLQCIIWYT LMLFLFEYRG ARLLVMEQFP DTAASIVSFR
     VDSDVVSLAG GGGGAAELQA EAEVGDDGRM RVTVRKSTSS RSEAACSHGT QSHSQSMQPR
     VSNLSGVEIY SLQSSRNPTP RGSSFNHAEF FNIVGNGKQG DEEKGAAGGG GHSPQPVVGK
     RKDLHMFVWS SSASPVSERA AAAAAGAVHV FGGGGADHGD AKGAQAYDEY SFGNKNEKDG
     PTLSKLGSNS TAQLRPKDDG EGMAAAMPPA SVMTRLILIM VWRKLIRNPN TYSSLLGVIW
     SLVSYRWGIE MPAIIARSIS ILSDAGLGMA MFSLGLFMAL QPRIIACGNS LASYAMAVRF
     LVGPAVMAAA SIAVGLRGVL LHIAIVQAAL PQGIVPFVFA KEYNVHPNIL STAVIFGMLI
     ALPITLVYYI LLGL
 
 
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