PIN1C_ORYSJ
ID PIN1C_ORYSJ Reviewed; 592 AA.
AC Q67UL3; Q0DDD2;
DT 10-JAN-2006, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=Probable auxin efflux carrier component 1c {ECO:0000305};
DE Short=OsPIN1c {ECO:0000303|PubMed:16085936};
DE AltName: Full=OsPIN1a {ECO:0000303|PubMed:19825657};
GN Name=PIN1C {ECO:0000303|PubMed:16085936};
GN OrderedLocusNames=Os06g0232300 {ECO:0000312|EMBL:BAS96925.1},
GN LOC_Os06g12610 {ECO:0000305};
GN ORFNames=P0479H10.14 {ECO:0000312|EMBL:BAD38156.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP IDENTIFICATION, AND TISSUE SPECIFICITY.
RX DOI=10.1016/j.plantsci.2010.02.018;
RA Miyashita Y., Takasugi T., Ito Y.;
RT "Identification and expression analysis of PIN genes in rice.";
RL Plant Sci. 178:424-428(2010).
RN [6]
RP NOMENCLATURE.
RX PubMed=16085936; DOI=10.1093/pcp/pci183;
RA Xu M., Zhu L., Shou H., Wu P.;
RT "A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root
RT emergence and tillering in rice.";
RL Plant Cell Physiol. 46:1674-1681(2005).
RN [7]
RP TISSUE SPECIFICITY.
RX PubMed=19825657; DOI=10.1093/mp/ssp023;
RA Wang J.R., Hu H., Wang G.H., Li J., Chen J.Y., Wu P.;
RT "Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and
RT regulation by hormones.";
RL Mol. Plant 2:823-831(2009).
CC -!- FUNCTION: May act as a component of the auxin efflux carrier.
CC {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed at low levels in roots and leaves
CC (Ref.5). Expressed in roots, stem bases, stems, leaves and young
CC panicles (PubMed:19825657). {ECO:0000269|PubMed:19825657,
CC ECO:0000269|Ref.5}.
CC -!- SIMILARITY: Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
CC {ECO:0000305}.
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DR EMBL; AP005522; BAD38156.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF19141.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS96925.1; -; Genomic_DNA.
DR EMBL; AK103208; BAG95954.1; -; mRNA.
DR EMBL; BR000829; FAA00678.1; -; Genomic_DNA.
DR RefSeq; XP_015641301.1; XM_015785815.1.
DR AlphaFoldDB; Q67UL3; -.
DR STRING; 4530.OS06T0232300-01; -.
DR PaxDb; Q67UL3; -.
DR PRIDE; Q67UL3; -.
DR EnsemblPlants; Os06t0232300-01; Os06t0232300-01; Os06g0232300.
DR GeneID; 4340580; -.
DR Gramene; Os06t0232300-01; Os06t0232300-01; Os06g0232300.
DR KEGG; osa:4340580; -.
DR eggNOG; ENOG502QRM7; Eukaryota.
DR HOGENOM; CLU_019285_1_1_1; -.
DR InParanoid; Q67UL3; -.
DR OMA; YSMMASG; -.
DR OrthoDB; 337723at2759; -.
DR PlantReactome; R-OSA-5608118; Auxin signalling.
DR PlantReactome; R-OSA-8858053; Polar auxin transport.
DR PlantReactome; R-OSA-9639861; Development of root hair.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q67UL3; OS.
DR GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0010329; F:auxin efflux transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0010315; P:auxin export across the plasma membrane; IBA:GO_Central.
DR GO; GO:0010252; P:auxin homeostasis; IBA:GO_Central.
DR GO; GO:0009926; P:auxin polar transport; IBA:GO_Central.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR InterPro; IPR014024; Auxin_eff_plant.
DR InterPro; IPR004776; Mem_trans.
DR Pfam; PF03547; Mem_trans; 1.
DR TIGRFAMs; TIGR00946; 2a69; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Glycoprotein; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix; Transport.
FT CHAIN 1..592
FT /note="Probable auxin efflux carrier component 1c"
FT /id="PRO_0000123790"
FT TRANSMEM 7..27
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 39..59
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 71..91
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 101..121
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 132..152
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 453..473
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 477..497
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 512..532
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 538..558
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 572..592
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 214..236
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 282..331
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 211
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 234
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 257
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 592 AA; 64323 MW; 606356DD1A953892 CRC64;
MITGADFYHV MTAMVPLYVA MILAYGSVKW WRIFTPDQCS GINRFVALFA VPLLSFHFIS
TNNPYTMNLR FIAADTLQKL IVLALLTLWS HLSRRGSLEW TITLFSLSTL PNTLVMGIPL
LKGMYGEFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARIL ITEQFPDTAG AIASIVVDAD
VVSLDGRRDM IETEAEVKED GKIHVTVRRS NASRSDVYSR RSMGFSSTTP RPSNLTNAEI
YSLQSSRNPT PRGSSFNHTD FYSMVGRSSN FAAGDAFGVR TGATPRPSNY EEDAAAPNKA
GSKYGQYPAP NPAMAAPPKP KKAANGQAKG EDGKDLHMFV WSSSASPVSD VFGNGAEYND
AAAVKEVRMA VASPRKADGV ERDDFSFGNR GVAERDAEAG DEKSVAAAVS GEHGKPGLTP
APTAMPPTSV MTRLILIMVW RKLIRNPNTY SSLIGLIWSL VCFRWNFEMP AIILKSISIL
SDAGLGMAMF SLGLFMALQP RIIACGNKVA TFAMAVRFLT GPAVMAAASI AVGLRGTLLH
VAIVQAALPQ GIVPFVFAKE YSVHPDILST AVIFGMLIAL PITLVYYILL GL
