PIN3B_ORYSJ
ID PIN3B_ORYSJ Reviewed; 591 AA.
AC Q6L5F6; C7J235; D5A7J1;
DT 10-JAN-2006, integrated into UniProtKB/Swiss-Prot.
DT 05-OCT-2016, sequence version 3.
DT 03-AUG-2022, entry version 89.
DE RecName: Full=Probable auxin efflux carrier component 3b {ECO:0000305};
DE Short=OsPIN3b {ECO:0000303|PubMed:16085936};
DE AltName: Full=OSPIN10b {ECO:0000303|PubMed:19825657};
GN Name=PIN3B {ECO:0000303|PubMed:16085936};
GN OrderedLocusNames=Os05g0576900 {ECO:0000312|EMBL:BAS95485.1},
GN LOC_Os05g50140 {ECO:0000305};
GN ORFNames=OJ1126_B10.6 {ECO:0000312|EMBL:AAT39149.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP IDENTIFICATION.
RX DOI=10.1016/j.plantsci.2010.02.018;
RA Miyashita Y., Takasugi T., Ito Y.;
RT "Identification and expression analysis of PIN genes in rice.";
RL Plant Sci. 178:424-428(2010).
RN [6]
RP NOMENCLATURE.
RX PubMed=16085936; DOI=10.1093/pcp/pci183;
RA Xu M., Zhu L., Shou H., Wu P.;
RT "A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root
RT emergence and tillering in rice.";
RL Plant Cell Physiol. 46:1674-1681(2005).
RN [7]
RP TISSUE SPECIFICITY.
RX PubMed=19825657; DOI=10.1093/mp/ssp023;
RA Wang J.R., Hu H., Wang G.H., Li J., Chen J.Y., Wu P.;
RT "Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and
RT regulation by hormones.";
RL Mol. Plant 2:823-831(2009).
CC -!- FUNCTION: May act as a component of the auxin efflux carrier.
CC {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed in stem bases and leaves.
CC {ECO:0000269|PubMed:19825657}.
CC -!- SIMILARITY: Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAT39149.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAH93265.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC098571; AAT39149.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008211; BAH93265.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014961; BAS95485.1; -; Genomic_DNA.
DR EMBL; BR000833; FAA00682.1; -; Genomic_DNA.
DR RefSeq; XP_015638890.1; XM_015783404.1.
DR AlphaFoldDB; Q6L5F6; -.
DR STRING; 4530.OS05T0576900-01; -.
DR PaxDb; Q6L5F6; -.
DR PRIDE; Q6L5F6; -.
DR EnsemblPlants; Os05t0576900-01; Os05t0576900-01; Os05g0576900.
DR GeneID; 9270681; -.
DR Gramene; Os05t0576900-01; Os05t0576900-01; Os05g0576900.
DR KEGG; osa:9270681; -.
DR eggNOG; ENOG502QRM7; Eukaryota.
DR InParanoid; Q6L5F6; -.
DR OMA; YTVLCAV; -.
DR OrthoDB; 646945at2759; -.
DR PlantReactome; R-OSA-5608118; Auxin signalling.
DR PlantReactome; R-OSA-8858053; Polar auxin transport.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q6L5F6; OS.
DR GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0010329; F:auxin efflux transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0010315; P:auxin export across the plasma membrane; IBA:GO_Central.
DR GO; GO:0010252; P:auxin homeostasis; IBA:GO_Central.
DR GO; GO:0009926; P:auxin polar transport; IBA:GO_Central.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR InterPro; IPR014024; Auxin_eff_plant.
DR InterPro; IPR004776; Mem_trans.
DR Pfam; PF03547; Mem_trans; 1.
DR TIGRFAMs; TIGR00946; 2a69; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Glycoprotein; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix; Transport.
FT CHAIN 1..591
FT /note="Probable auxin efflux carrier component 3b"
FT /id="PRO_0000123793"
FT TRANSMEM 7..27
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 39..59
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 71..93
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 108..128
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 138..158
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 451..471
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 475..495
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 512..532
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 536..556
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 569..589
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 243..269
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 283..313
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 344..374
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 392..420
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 394..408
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 231
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 591 AA; 62931 MW; 56BC9A453CA0ADEF CRC64;
MISWHELYMV LSAVVPLYVA MMVAYGSVRW WGVLTPEQCS GINRFVAVIA VPLLSFHFIS
SSDPYAMNLR FVAADTLQKV LVLAALAAWS RFPARFVPPA WPPLDCSITL FSVSTLPNTL
VMGIPLLVSM YGPYSGDLMV QIVVLQSIVW YTLLLFLFEF RAARVLIAAQ FPDTAASIAA
VHVDPDVVSL EGSQAEAHAE VAPDGRLRMV VCRSSVSRRS AAAAATPRAS NLTGVEIYSI
SSSRNATPRG STFTLADIPG HQPPNSALRA SSFGAADLFS LHSSSRQHTP RPSSFDEHAA
ARARASATVA PTNDLKDTHM IEWSSGASAA SEVTGLPVFR SGRETRRLVP SDAPSIASSR
VIRPPPGATG GERAASFNKA VGGQDELAKL EAGAKTEQQT TAVTTTTKGG GAAGAERARG
QQNAPAGVML RLILTTVWRR LIRNPNTYAS LIGLTWSLIA FRFHITMPII VAKSISILSD
AGLGMAMFSL GLFMATQPKI IACGYSVAAA SMGVRFFFGP AIMAAASAAV GIRGTLLRIA
IVQAALPQGI VPFVFAKEYN LHATILCTLV IFGMLIALPI TLVYYIILGL L
