PIN5A_ORYSJ
ID PIN5A_ORYSJ Reviewed; 363 AA.
AC Q5JLM1; Q0JGK0;
DT 10-JAN-2006, integrated into UniProtKB/Swiss-Prot.
DT 15-FEB-2005, sequence version 1.
DT 03-AUG-2022, entry version 86.
DE RecName: Full=Probable auxin efflux carrier component 5a {ECO:0000305};
DE Short=OsPIN5a {ECO:0000303|Ref.6};
GN Name=PIN5A {ECO:0000303|Ref.6};
GN OrderedLocusNames=Os01g0919800 {ECO:0000312|EMBL:BAS75920.1},
GN LOC_Os01g69070 {ECO:0000305};
GN ORFNames=P0678F11.27 {ECO:0000312|EMBL:BAD87633.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP IDENTIFICATION, AND TISSUE SPECIFICITY.
RX DOI=10.1016/j.plantsci.2010.02.018;
RA Miyashita Y., Takasugi T., Ito Y.;
RT "Identification and expression analysis of PIN genes in rice.";
RL Plant Sci. 178:424-428(2010).
RN [7]
RP TISSUE SPECIFICITY.
RX PubMed=19825657; DOI=10.1093/mp/ssp023;
RA Wang J.R., Hu H., Wang G.H., Li J., Chen J.Y., Wu P.;
RT "Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and
RT regulation by hormones.";
RL Mol. Plant 2:823-831(2009).
CC -!- FUNCTION: May act as a component of the auxin efflux carrier.
CC {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed in leaves, shoot apex and panicles
CC (Ref.6). Expressed in roots, stem bases, stems, leaves and young
CC panicles (PubMed:19825657). {ECO:0000269|PubMed:19825657,
CC ECO:0000269|Ref.6}.
CC -!- SIMILARITY: Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
CC {ECO:0000305}.
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DR EMBL; AP003437; BAD87633.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF07128.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75920.1; -; Genomic_DNA.
DR EMBL; AK066552; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; BR000834; FAA00683.1; -; Genomic_DNA.
DR RefSeq; XP_015621857.1; XM_015766371.1.
DR AlphaFoldDB; Q5JLM1; -.
DR STRING; 4530.OS01T0919800-01; -.
DR PaxDb; Q5JLM1; -.
DR PRIDE; Q5JLM1; -.
DR EnsemblPlants; Os01t0919800-01; Os01t0919800-01; Os01g0919800.
DR GeneID; 4324368; -.
DR Gramene; Os01t0919800-01; Os01t0919800-01; Os01g0919800.
DR KEGG; osa:4324368; -.
DR eggNOG; ENOG502QS1X; Eukaryota.
DR HOGENOM; CLU_019285_0_0_1; -.
DR InParanoid; Q5JLM1; -.
DR OMA; YYAVLEF; -.
DR OrthoDB; 1106458at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q5JLM1; OS.
DR GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0010329; F:auxin efflux transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0010315; P:auxin export across the plasma membrane; IBA:GO_Central.
DR GO; GO:0010252; P:auxin homeostasis; IBA:GO_Central.
DR GO; GO:0009926; P:auxin polar transport; IBA:GO_Central.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR InterPro; IPR014024; Auxin_eff_plant.
DR InterPro; IPR004776; Mem_trans.
DR Pfam; PF03547; Mem_trans; 2.
DR TIGRFAMs; TIGR00946; 2a69; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix; Transport.
FT CHAIN 1..363
FT /note="Probable auxin efflux carrier component 5a"
FT /id="PRO_0000123796"
FT TRANSMEM 7..27
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 39..59
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 72..92
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 103..123
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 134..154
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 222..242
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 246..266
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 281..301
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 307..327
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 342..362
FT /note="Helical"
FT /evidence="ECO:0000255"
FT CONFLICT 159
FT /note="A -> V (in Ref. 5; AK066552)"
FT /evidence="ECO:0000305"
FT CONFLICT 294
FT /note="M -> V (in Ref. 5; AK066552)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 363 AA; 38625 MW; 7920BA01CF782E8B CRC64;
MIGWGDVYKV VAATVPLYFA LFLGYGSVRW WRIFTREQCD AVNRLVAFFA LPFFTFEFTL
HTDPFQVNYR AVAADVISKA VIVAVIGAWA RFMSKGGCAV SWSITSFSLS TLTNSLVVGV
PMARAMYGEW AQQLVVQLSV FQAIVWLTLL LFVLEVRKAA IGMYVDGAEA AAAAGKDVEA
AGAAAAAGTV VVAAAAGKPS LWALVKVVAH KLARNPNTYA SFVGITWACL ANRLHIALPS
AFEGSVLIMS KSGTGMAMFS MGLFMAQQEK IIACGTSFAA LGLVLKFALG PAAMAIGSIA
VGLRGDVLRV AIIQAALPQS ITSFIFAKEY GLHADVLSTA VIFGMLVSLP LLVGFYIVLE
LIR
