PIN5B_ORYSJ
ID PIN5B_ORYSJ Reviewed; 368 AA.
AC D5A7J3; A0A0P0XPK3; Q0J0M0;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 15-JUN-2010, sequence version 1.
DT 03-AUG-2022, entry version 39.
DE RecName: Full=Probable auxin efflux carrier component 5b {ECO:0000305};
DE Short=OsPIN5b {ECO:0000303|Ref.4};
DE AltName: Full=OsPIN5c {ECO:0000305};
GN Name=PIN5B {ECO:0000303|Ref.4};
GN OrderedLocusNames=Os09g0505400 {ECO:0000312|EMBL:BAF25516.1},
GN LOC_Os09g32770 {ECO:0000305};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP IDENTIFICATION, AND TISSUE SPECIFICITY.
RX DOI=10.1016/j.plantsci.2010.02.018;
RA Miyashita Y., Takasugi T., Ito Y.;
RT "Identification and expression analysis of PIN genes in rice.";
RL Plant Sci. 178:424-428(2010).
CC -!- FUNCTION: May act as a component of the auxin efflux carrier.
CC {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed at low levels in roots and shoot apex.
CC {ECO:0000269|Ref.4}.
CC -!- SIMILARITY: Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF25516.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAT08851.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP008215; BAF25516.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014965; BAT08851.1; ALT_SEQ; Genomic_DNA.
DR EMBL; BR000835; FAA00684.1; -; Genomic_DNA.
DR RefSeq; XP_015611661.1; XM_015756175.1.
DR AlphaFoldDB; D5A7J3; -.
DR STRING; 39947.D5A7J3; -.
DR PRIDE; D5A7J3; -.
DR GeneID; 4347506; -.
DR KEGG; osa:4347506; -.
DR OrthoDB; 1106458at2759; -.
DR PlantReactome; R-OSA-8858053; Polar auxin transport.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0010329; F:auxin efflux transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0010315; P:auxin export across the plasma membrane; IBA:GO_Central.
DR GO; GO:0010252; P:auxin homeostasis; IBA:GO_Central.
DR GO; GO:0009926; P:auxin polar transport; IBA:GO_Central.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR InterPro; IPR014024; Auxin_eff_plant.
DR InterPro; IPR004776; Mem_trans.
DR Pfam; PF03547; Mem_trans; 2.
DR TIGRFAMs; TIGR00946; 2a69; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix; Transport.
FT CHAIN 1..368
FT /note="Probable auxin efflux carrier component 5b"
FT /id="PRO_0000437477"
FT TRANSMEM 7..27
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 39..59
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 71..91
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 114..134
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 145..165
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 227..247
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 251..271
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 286..306
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 312..332
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 347..367
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 368 AA; 38694 MW; 126570006B820B90 CRC64;
MIGWGDVYKV VAAMAPLYFA LGLGYGSVRW WRLFTADQCD AVNRLVACFA VPFFAFDFAA
RIDPFALSYR VLAADALSKL AVALALAACA AAASTRCCGS GGGKRGGGGG FSWCITGFSL
ATLNNTLVVG VPLLDAMYGK WARDLIVQIS VVQTIVYFPL LLLAFEVRRA TTAAAAPPPP
PTGTDDDDVE DGAAAAATAA AARRSLWPLV RAVWLKVARN PNVYAGVLGV AWACVTNRWH
VETPSIIEGS VLIMSKTGVG LSMFSMGLFM ALQDKIIVCG AGLTVLGMAL RFVAGPAATA
VGAFALGLRG DLLRLAIIQA ALPQSITTFV FAKEYGLHAE ILSTAVIFGT LASLPVLIVY
YIVLGFIR
