PIN5C_ORYSJ
ID PIN5C_ORYSJ Reviewed; 370 AA.
AC Q6ZIB5; Q0J484;
DT 10-JAN-2006, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=Probable auxin efflux carrier component 5c {ECO:0000305};
DE Short=OsPIN5c {ECO:0000303|Ref.5};
DE AltName: Full=OsPIN5b {ECO:0000303|PubMed:19825657};
GN Name=PIN5C {ECO:0000303|Ref.5};
GN OrderedLocusNames=Os08g0529000 {ECO:0000312|EMBL:BAT06374.1},
GN LOC_Os08g41720 {ECO:0000305};
GN ORFNames=OJ1770_H02.15 {ECO:0000312|EMBL:BAD09105.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP IDENTIFICATION, AND TISSUE SPECIFICITY.
RX DOI=10.1016/j.plantsci.2010.02.018;
RA Miyashita Y., Takasugi T., Ito Y.;
RT "Identification and expression analysis of PIN genes in rice.";
RL Plant Sci. 178:424-428(2010).
RN [6]
RP TISSUE SPECIFICITY.
RX PubMed=19825657; DOI=10.1093/mp/ssp023;
RA Wang J.R., Hu H., Wang G.H., Li J., Chen J.Y., Wu P.;
RT "Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and
RT regulation by hormones.";
RL Mol. Plant 2:823-831(2009).
CC -!- FUNCTION: May act as a component of the auxin efflux carrier.
CC {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, leaves, shoot apex and
CC panicles. {ECO:0000269|Ref.5}.
CC -!- SIMILARITY: Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
CC {ECO:0000305}.
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DR EMBL; AP004015; BAD09105.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF24231.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT06374.1; -; Genomic_DNA.
DR EMBL; AK100297; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; BR000836; FAA00685.1; -; Genomic_DNA.
DR RefSeq; XP_015649102.1; XM_015793616.1.
DR AlphaFoldDB; Q6ZIB5; -.
DR STRING; 4530.OS08T0529000-01; -.
DR PaxDb; Q6ZIB5; -.
DR PRIDE; Q6ZIB5; -.
DR EnsemblPlants; Os08t0529000-01; Os08t0529000-01; Os08g0529000.
DR GeneID; 4346116; -.
DR Gramene; Os08t0529000-01; Os08t0529000-01; Os08g0529000.
DR KEGG; osa:4346116; -.
DR eggNOG; ENOG502QS1X; Eukaryota.
DR HOGENOM; CLU_019285_0_0_1; -.
DR InParanoid; Q6ZIB5; -.
DR OMA; LMAFELR; -.
DR OrthoDB; 1106458at2759; -.
DR PlantReactome; R-OSA-5608118; Auxin signalling.
DR PlantReactome; R-OSA-8858053; Polar auxin transport.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q6ZIB5; OS.
DR GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0010329; F:auxin efflux transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0010315; P:auxin export across the plasma membrane; IBA:GO_Central.
DR GO; GO:0010252; P:auxin homeostasis; IBA:GO_Central.
DR GO; GO:0009926; P:auxin polar transport; IBA:GO_Central.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR InterPro; IPR014024; Auxin_eff_plant.
DR InterPro; IPR004776; Mem_trans.
DR Pfam; PF03547; Mem_trans; 2.
DR TIGRFAMs; TIGR00946; 2a69; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix; Transport.
FT CHAIN 1..370
FT /note="Probable auxin efflux carrier component 5c"
FT /id="PRO_0000123794"
FT TRANSMEM 7..27
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 40..60
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 70..90
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 107..127
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 138..158
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 230..250
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 254..274
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 289..309
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 315..335
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 349..369
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 370 AA; 39032 MW; 78670B602C32F38D CRC64;
MIGWGDVYKV VGAMAPLYFA LGLGYGSVRW WRFFTAEQCA AINTMVVYFS MPFFTFDFVV
RTDPFAMNYR VIAADAVSKA IAIAAMAAWA RTRCGCAAAK AGAQSWSITG FSLAALNNTL
VVGVPLLDAM YGRWAQDLVV QIAVVQSMVW FPLLLMAFEL RKAWVVGGGG GVGPAVMSSS
SPPEKQSDVE MNGAVVAAPG GGGGVRLPFW ATARTVGLKL ARNPNVYASV LGVVWACIAY
RWHLSLPGIV TGSLQVMSRT GTGMSMFSMG LFMGQQERVI ACGAGLTALG MALRFVAGPL
ATLVGAAALG LRGDVLHLAI IQAALPQSIA SFVFAKEYGL HADVLSTAVI FGTLISLPIL
IAYYAVLGFV
