PIP13_ORYSJ
ID PIP13_ORYSJ Reviewed; 288 AA.
AC Q9SXF8; B7ESS8; O80424; Q0DWA8; Q6K9X6;
DT 16-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 16-AUG-2005, sequence version 2.
DT 03-AUG-2022, entry version 145.
DE RecName: Full=Aquaporin PIP 1-3;
DE AltName: Full=OsPIP1;3;
DE AltName: Full=Plasma membrane intrinsic protein 1-3;
DE AltName: Full=Water channel protein RWC3;
DE Short=RWC-3;
GN Name=PIP1-3; Synonyms=RWC3; OrderedLocusNames=Os02g0823100, LOC_Os02g57720;
GN ORFNames=OJ1136_C04.6, OsJ_008613;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC TISSUE=Seedling;
RA Li L., Tao Y., Kitagawa Y.;
RT "Rice water channel-3 (rwc3) gene, promoter region.";
RL Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, AND INDUCTION.
RX PubMed=15111723; DOI=10.1093/pcp/pch058;
RA Lian H.-L., Yu X., Ye Q., Ding X.-S., Kitagawa Y., Kwak S.-S., Su W.-A.,
RA Tang Z.-C.;
RT "The role of aquaporin RWC3 in drought avoidance in rice.";
RL Plant Cell Physiol. 45:481-489(2004).
RN [8]
RP ERRATUM OF PUBMED:15111723.
RA Lian H.-L., Yu X., Ye Q., Ding X.-S., Kitagawa Y., Kwak S.-S., Su W.-A.,
RA Tang Z.-C.;
RL Plant Cell Physiol. 45:810-810(2004).
RN [9]
RP NOMENCLATURE, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=16033806; DOI=10.1093/pcp/pci172;
RA Sakurai J., Ishikawa F., Yamaguchi T., Uemura M., Maeshima M.;
RT "Identification of 33 rice aquaporin genes and analysis of their expression
RT and function.";
RL Plant Cell Physiol. 46:1568-1577(2005).
CC -!- FUNCTION: Water channel required to facilitate the transport of water
CC across cell membrane. Increases the capacity for root water uptake
CC under water deficit. May play a role in drought avoidance in upland
CC rice. {ECO:0000269|PubMed:15111723}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Multi-pass membrane
CC protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in roots and leaves.
CC {ECO:0000269|PubMed:16033806}.
CC -!- INDUCTION: By water deficit in upland rice. Expression decreased by
CC water deficit in lowland rice. Circadian-regulation. Expression is
CC higher during the light phase than during the dark phase.
CC {ECO:0000269|PubMed:15111723, ECO:0000269|PubMed:16033806}.
CC -!- DOMAIN: Aquaporins contain two tandem repeats each containing three
CC membrane-spanning domains and a pore-forming loop with the signature
CC motif Asn-Pro-Ala (NPA).
CC -!- SIMILARITY: Belongs to the MIP/aquaporin (TC 1.A.8) family. PIP (TC
CC 1.A.8.11) subfamily. {ECO:0000305}.
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DR EMBL; AB016623; BAA32081.1; -; Genomic_DNA.
DR EMBL; AB029325; BAA81820.1; -; Genomic_DNA.
DR EMBL; AP004026; BAD22920.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF10480.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS81656.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ25130.1; -; Genomic_DNA.
DR EMBL; AK102174; BAG95425.1; -; mRNA.
DR RefSeq; XP_015625572.1; XM_015770086.1.
DR AlphaFoldDB; Q9SXF8; -.
DR SMR; Q9SXF8; -.
DR STRING; 4530.OS02T0823100-01; -.
DR PaxDb; Q9SXF8; -.
DR PRIDE; Q9SXF8; -.
DR EnsemblPlants; Os02t0823100-01; Os02t0823100-01; Os02g0823100.
DR GeneID; 4331194; -.
DR Gramene; Os02t0823100-01; Os02t0823100-01; Os02g0823100.
DR KEGG; osa:4331194; -.
DR eggNOG; KOG0223; Eukaryota.
DR HOGENOM; CLU_020019_3_0_1; -.
DR InParanoid; Q9SXF8; -.
DR OMA; DIWTSHW; -.
DR OrthoDB; 1152704at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q9SXF8; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0015250; F:water channel activity; IBA:GO_Central.
DR CDD; cd00333; MIP; 1.
DR Gene3D; 1.20.1080.10; -; 1.
DR InterPro; IPR023271; Aquaporin-like.
DR InterPro; IPR034294; Aquaporin_transptr.
DR InterPro; IPR000425; MIP.
DR InterPro; IPR022357; MIP_CS.
DR PANTHER; PTHR45687; PTHR45687; 1.
DR Pfam; PF00230; MIP; 1.
DR PRINTS; PR00783; MINTRINSICP.
DR SUPFAM; SSF81338; SSF81338; 1.
DR TIGRFAMs; TIGR00861; MIP; 1.
DR PROSITE; PS00221; MIP; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Membrane; Reference proteome; Repeat; Stress response;
KW Transmembrane; Transmembrane helix; Transport.
FT CHAIN 1..288
FT /note="Aquaporin PIP 1-3"
FT /id="PRO_0000064033"
FT TRANSMEM 57..77
FT /note="Helical; Name=1"
FT /evidence="ECO:0000255"
FT TRANSMEM 92..114
FT /note="Helical; Name=2"
FT /evidence="ECO:0000255"
FT TRANSMEM 135..155
FT /note="Helical; Name=3"
FT /evidence="ECO:0000255"
FT TRANSMEM 177..197
FT /note="Helical; Name=4"
FT /evidence="ECO:0000255"
FT TRANSMEM 211..231
FT /note="Helical; Name=5"
FT /evidence="ECO:0000255"
FT TRANSMEM 259..279
FT /note="Helical; Name=6"
FT /evidence="ECO:0000255"
FT REGION 1..30
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 116..118
FT /note="NPA 1"
FT MOTIF 237..239
FT /note="NPA 2"
FT CONFLICT 37..44
FT /note="PAAPVFEV -> RRRRCSTA (in Ref. 1; BAA32081/BAA81820)"
FT /evidence="ECO:0000305"
FT CONFLICT 217
FT /note="I -> M (in Ref. 1; BAA32081)"
FT /evidence="ECO:0000305"
FT CONFLICT 218
FT /note="Missing (in Ref. 1; BAA32081/BAA81820)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 288 AA; 30757 MW; 26ACDBCF402D62A3 CRC64;
MEGKEEDVRL GANRYTERQP IGTAAQGAEE KDYREPPAAP VFEVEELTSW SFYRAGIAEF
VATFLFLYIS ILTVMGVNKS ASKCATVGIQ GIAWSFGGMI FALVYCTAGI SGGHINPAVT
FGLFLARKLS LTRAVFYMAM QCLGAICGAG VVKGFQRGLY MGSGGGANAV NPGYTKGDGL
GAEIVGTFVL VYTVFSATDA KRNARDSHVP ILAPLPIGFA VFLVHLATIP ITGTGINPAR
SLGAAIVYNR AHAWHDHWIF WVGPFIGAAL AAIYHVVVIR AIPFKSRD
