PIRL1_ORYSJ
ID PIRL1_ORYSJ Reviewed; 352 AA.
AC Q7XNY1; A0A0P0WEU5;
DT 16-OCT-2013, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2004, sequence version 2.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Plant intracellular Ras-group-related LRR protein 1;
DE AltName: Full=Intracellular Ras-group-related LRR protein 1;
DE Short=OsIRL1;
GN Name=IRL1; OrderedLocusNames=Os04g0605300, LOC_Os04g51580;
GN ORFNames=OsJ_16067, OSJNBb0015N08.10;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, MOTIF GVYW, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
RX PubMed=20949308; DOI=10.1007/s11103-010-9704-6;
RA You C., Dai X., Li X., Wang L., Chen G., Xiao J., Wu C.;
RT "Molecular characterization, expression pattern, and functional analysis of
RT the OsIRL gene family encoding intracellular Ras-group-related LRR proteins
RT in rice.";
RL Plant Mol. Biol. 74:617-629(2010).
CC -!- FUNCTION: Leucine-rich repeat protein that likely mediates protein
CC interactions, possibly in the context of signal transduction.
CC {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Widely expressed but at a lower level in seedlings
CC and stems. {ECO:0000269|PubMed:20949308}.
CC -!- DISRUPTION PHENOTYPE: Late flowering. {ECO:0000269|PubMed:20949308}.
CC -!- SIMILARITY: Belongs to the SHOC2 family. {ECO:0000305}.
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DR EMBL; AL662996; CAE03882.2; -; Genomic_DNA.
DR EMBL; AP008210; BAF15708.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS90882.1; -; Genomic_DNA.
DR EMBL; CM000141; EAZ31902.1; -; Genomic_DNA.
DR EMBL; AK061732; BAG88076.1; -; mRNA.
DR EMBL; AK066546; BAG90023.1; -; mRNA.
DR EMBL; AK104574; BAG96799.1; -; mRNA.
DR RefSeq; XP_015636867.1; XM_015781381.1.
DR AlphaFoldDB; Q7XNY1; -.
DR SMR; Q7XNY1; -.
DR STRING; 4530.OS04T0605300-01; -.
DR PaxDb; Q7XNY1; -.
DR PRIDE; Q7XNY1; -.
DR EnsemblPlants; Os04t0605300-01; Os04t0605300-01; Os04g0605300.
DR EnsemblPlants; Os04t0605300-02; Os04t0605300-02; Os04g0605300.
DR GeneID; 4336911; -.
DR Gramene; Os04t0605300-01; Os04t0605300-01; Os04g0605300.
DR Gramene; Os04t0605300-02; Os04t0605300-02; Os04g0605300.
DR KEGG; osa:4336911; -.
DR eggNOG; KOG0619; Eukaryota.
DR HOGENOM; CLU_000288_18_0_1; -.
DR InParanoid; Q7XNY1; -.
DR OMA; KKSWGIG; -.
DR OrthoDB; 1382533at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q7XNY1; OS.
DR Gene3D; 3.80.10.10; -; 2.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF13855; LRR_8; 2.
DR SMART; SM00369; LRR_TYP; 7.
DR PROSITE; PS51450; LRR; 8.
PE 2: Evidence at transcript level;
KW Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..352
FT /note="Plant intracellular Ras-group-related LRR protein 1"
FT /id="PRO_0000423610"
FT REPEAT 29..52
FT /note="LRR 1"
FT REPEAT 53..75
FT /note="LRR 2"
FT REPEAT 77..99
FT /note="LRR 3"
FT REPEAT 100..122
FT /note="LRR 4"
FT REPEAT 124..146
FT /note="LRR 5"
FT REPEAT 147..169
FT /note="LRR 6"
FT REPEAT 171..192
FT /note="LRR 7"
FT REPEAT 195..217
FT /note="LRR 8"
FT REPEAT 218..241
FT /note="LRR 9"
FT REPEAT 243..263
FT /note="LRR 10"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 264..271
FT /note="GVYW; degenerate"
SQ SEQUENCE 352 AA; 39014 MW; 65DF880E9AC2C4BE CRC64;
MREMGEKRRR GHLNPAGFAG GLHDHEEKKN EEHKLDMSGM SMDALPHLTM SLGQVTILDL
SNNNLESIPE SIIARLLNVV VLDVRSNQLK SLPNSIGCLS KLKVLNVSGN LLESLPNTIE
ECRALEELHA NFNELTKLPD TLGFELHSLR KLSVNSNKLA QLPSSTSHMT ALRALDARLN
CLRALPDGLE NLANLEALNV SQNFQFLREL PYAVGLLASL RELDVSYNSI AALPDSMGCL
TKLARFSAVG NPLVSPPMDV VEQGLDAMRA YLTARMNGGD GKRKKKAWLP KLVKYSTFTA
RMTPGRTRVH ENTEGLLMSD YRSLNGIASP RFLTMLSPRR LFSPRRNSPK HC
