PIRL2_ORYSJ
ID PIRL2_ORYSJ Reviewed; 501 AA.
AC Q6ZH85; A0A0N7KFL2;
DT 16-OCT-2013, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Plant intracellular Ras-group-related LRR protein 2;
DE AltName: Full=Intracellular Ras-group-related LRR protein 2;
DE Short=OsIRL2;
GN Name=IRL2; OrderedLocusNames=Os02g0593600, LOC_Os02g38040;
GN ORFNames=OJ1067_B01.5, OsJ_07347, OSJNBa0016G10.27;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, MOTIF GVYW, AND TISSUE SPECIFICITY.
RX PubMed=20949308; DOI=10.1007/s11103-010-9704-6;
RA You C., Dai X., Li X., Wang L., Chen G., Xiao J., Wu C.;
RT "Molecular characterization, expression pattern, and functional analysis of
RT the OsIRL gene family encoding intracellular Ras-group-related LRR proteins
RT in rice.";
RL Plant Mol. Biol. 74:617-629(2010).
CC -!- FUNCTION: Leucine-rich repeat protein that likely mediates protein
CC interactions, possibly in the context of signal transduction.
CC {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Preferentially expressed in panicles.
CC {ECO:0000269|PubMed:20949308}.
CC -!- SIMILARITY: Belongs to the SHOC2 family. {ECO:0000305}.
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DR EMBL; AP004079; BAD16887.1; -; Genomic_DNA.
DR EMBL; AP005874; BAD34094.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09215.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS79529.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ23646.1; -; Genomic_DNA.
DR EMBL; AK069976; BAG91707.1; -; mRNA.
DR RefSeq; XP_015625350.1; XM_015769864.1.
DR AlphaFoldDB; Q6ZH85; -.
DR SMR; Q6ZH85; -.
DR STRING; 4530.OS02T0593600-01; -.
DR PaxDb; Q6ZH85; -.
DR PRIDE; Q6ZH85; -.
DR EnsemblPlants; Os02t0593600-01; Os02t0593600-01; Os02g0593600.
DR GeneID; 4329845; -.
DR Gramene; Os02t0593600-01; Os02t0593600-01; Os02g0593600.
DR KEGG; osa:4329845; -.
DR eggNOG; KOG0619; Eukaryota.
DR HOGENOM; CLU_021557_0_0_1; -.
DR InParanoid; Q6ZH85; -.
DR OMA; AVKTYMG; -.
DR OrthoDB; 783662at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6ZH85; OS.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF13855; LRR_8; 2.
DR SMART; SM00369; LRR_TYP; 8.
DR PROSITE; PS51450; LRR; 8.
PE 2: Evidence at transcript level;
KW Coiled coil; Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..501
FT /note="Plant intracellular Ras-group-related LRR protein 2"
FT /id="PRO_0000423611"
FT REPEAT 190..213
FT /note="LRR 1"
FT REPEAT 214..236
FT /note="LRR 2"
FT REPEAT 237..259
FT /note="LRR 3"
FT REPEAT 260..282
FT /note="LRR 4"
FT REPEAT 284..305
FT /note="LRR 5"
FT REPEAT 306..329
FT /note="LRR 6"
FT REPEAT 331..352
FT /note="LRR 7"
FT REPEAT 353..376
FT /note="LRR 8"
FT REPEAT 377..402
FT /note="LRR 9"
FT REPEAT 404..423
FT /note="LRR 10"
FT REGION 25..47
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 482..501
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 104..147
FT /evidence="ECO:0000255"
FT MOTIF 424..436
FT /note="GVYW"
SQ SEQUENCE 501 AA; 55208 MW; AB6A642DBFB43BA7 CRC64;
MDPTPQSHPI LAYVLSRLPS LLPVSPSLST PRARDIEQPS PRAPSGAAEF DLVSRMPGLR
HPSVLSAMTR AVADVSSARD ALRLLGPRPD HELVDSARAF LRSHAAEEAE EEEEDEKVAK
SREVVRLDEA HESYGGLLRE AEERLDRVYR TAMRGRDMQV VAAAHGGGGE EEAGVVDDEV
VRVLRDAEEG KAVERLLLAD RQLRHLPEQL GRIRGLLVLD VSRNQLKNVP DAIGGLEHLE
ELRLASNALV SLPDSIGLLT SLKILDVSGN KLRSLPDSIS KCRSLVELDV SYNVLSYLPT
GIGQEMARLE KLWVHLNKLR SLPSSVCEMR SLRLLDAHFN QLRGLPAGIG RLAALESLNL
SSNFSDMRDL PASFGDLLGL RELDLSNNQI HALPDCFGRL QRLERLRLDQ NPLAVPPKEV
VAGGVGAVKE YMARRWRDAR AEEERRGSAV AESPRVSTPK EWLVRSVSSL GSWVSDVTRY
GAGQDKAAAE EEEDAYLQQN L
