ID   PIRL5_ORYSJ             Reviewed;         543 AA.
AC   Q8S7M7; A0A0P0XXT2; Q0IVG6;
DT   16-OCT-2013, integrated into UniProtKB/Swiss-Prot.
DT   01-JUN-2002, sequence version 1.
DT   03-AUG-2022, entry version 111.
DE   RecName: Full=Plant intracellular Ras-group-related LRR protein 5;
DE   AltName: Full=Intracellular Ras-group-related LRR protein 5;
DE            Short=OsIRL5;
GN   Name=IRL5; OrderedLocusNames=Os10g0572300, LOC_Os10g42190;
GN   ORFNames=OsJ_32547, OSJNBa0095C07.8;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12791992; DOI=10.1126/science.1083523;
RA   Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA   Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA   Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA   Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA   Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA   Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA   Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA   Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA   Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA   Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA   Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA   Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA   Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA   Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA   Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA   Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA   Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT   "In-depth view of structure, activity, and evolution of rice chromosome
RT   10.";
RL   Science 300:1566-1569(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [7]
RP   GENE FAMILY, MOTIF GVYW, TISSUE SPECIFICITY, AND INDUCTION BY LIGHT.
RX   PubMed=20949308; DOI=10.1007/s11103-010-9704-6;
RA   You C., Dai X., Li X., Wang L., Chen G., Xiao J., Wu C.;
RT   "Molecular characterization, expression pattern, and functional analysis of
RT   the OsIRL gene family encoding intracellular Ras-group-related LRR proteins
RT   in rice.";
RL   Plant Mol. Biol. 74:617-629(2010).
CC   -!- FUNCTION: Leucine-rich repeat protein that likely mediates protein
CC       interactions, possibly in the context of signal transduction.
CC       {ECO:0000250}.
CC   -!- TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:20949308}.
CC   -!- INDUCTION: By light. {ECO:0000269|PubMed:20949308}.
CC   -!- SIMILARITY: Belongs to the SHOC2 family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAF27299.2; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR   EMBL; AC077693; AAL86486.1; -; Genomic_DNA.
DR   EMBL; DP000086; AAP55113.1; -; Genomic_DNA.
DR   EMBL; DP000086; ABB48010.1; -; Genomic_DNA.
DR   EMBL; AP008216; BAF27299.2; ALT_INIT; Genomic_DNA.
DR   EMBL; AP014966; BAT12165.1; -; Genomic_DNA.
DR   EMBL; CM000147; EAZ17053.1; -; Genomic_DNA.
DR   EMBL; AK102709; BAG95685.1; -; mRNA.
DR   RefSeq; XP_015614719.1; XM_015759233.1.
DR   AlphaFoldDB; Q8S7M7; -.
DR   SMR; Q8S7M7; -.
DR   STRING; 4530.OS10T0572300-01; -.
DR   PaxDb; Q8S7M7; -.
DR   PRIDE; Q8S7M7; -.
DR   EnsemblPlants; Os10t0572300-01; Os10t0572300-01; Os10g0572300.
DR   GeneID; 4349464; -.
DR   Gramene; Os10t0572300-01; Os10t0572300-01; Os10g0572300.
DR   KEGG; osa:4349464; -.
DR   eggNOG; KOG0619; Eukaryota.
DR   InParanoid; Q8S7M7; -.
DR   OMA; VDQMEWL; -.
DR   OrthoDB; 287114at2759; -.
DR   Proteomes; UP000000763; Chromosome 10.
DR   Proteomes; UP000007752; Chromosome 10.
DR   Proteomes; UP000059680; Chromosome 10.
DR   ExpressionAtlas; Q8S7M7; baseline and differential.
DR   Genevisible; Q8S7M7; OS.
DR   GO; GO:0009416; P:response to light stimulus; IEP:UniProtKB.
DR   Gene3D; 3.80.10.10; -; 1.
DR   InterPro; IPR001611; Leu-rich_rpt.
DR   InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
DR   InterPro; IPR032675; LRR_dom_sf.
DR   Pfam; PF13855; LRR_8; 3.
DR   SMART; SM00369; LRR_TYP; 9.
DR   PROSITE; PS51450; LRR; 10.
PE   2: Evidence at transcript level;
KW   Leucine-rich repeat; Reference proteome; Repeat.
FT   CHAIN           1..543
FT                   /note="Plant intracellular Ras-group-related LRR protein 5"
FT                   /id="PRO_0000423614"
FT   REPEAT          239..262
FT                   /note="LRR 1"
FT   REPEAT          264..284
FT                   /note="LRR 2"
FT   REPEAT          285..307
FT                   /note="LRR 3"
FT   REPEAT          309..331
FT                   /note="LRR 4"
FT   REPEAT          332..354
FT                   /note="LRR 5"
FT   REPEAT          356..377
FT                   /note="LRR 6"
FT   REPEAT          378..400
FT                   /note="LRR 7"
FT   REPEAT          402..424
FT                   /note="LRR 8"
FT   REPEAT          426..448
FT                   /note="LRR 9"
FT   REPEAT          449..470
FT                   /note="LRR 10"
FT   REPEAT          472..494
FT                   /note="LRR 11; degenerate"
FT   MOTIF           495..502
FT                   /note="GVYW; degenerate"
SQ   SEQUENCE   543 AA;  59205 MW;  35BFF76827495661 CRC64;
     MASAAEAVEE LTRLYRELPP RPAVEEVEAA EAVLASADAE EAARLDEVAR EEASASASSS
     AAAPGRADGE LLAVLREARR NAVRLRALQQ RKEAAYVVEL ERRFKVFDDL IQRASRVVSS
     SSDAAEAGGG TTGDGYVGVG ADSVDLEMEL RKKEAAVAAA AAVAEMERGS KGLAALGLES
     KPISSLRRDV SAGTDMEKLS LIQVASLIES SAKKGITELS LRGKLVDQIE WLPVSLGKLQ
     DVTELDLSEN RIMALPSTIG SLRYLTKLDL HSNQLINLPD AFGELSNLID LDLHANQLKS
     LPSSFGNLTS LANLDLSSNM LKALPDCLGK LANLRRLIVE TNELEELPYT IGSCTSLVEL
     RLDFNQLKAL PEAIGKLEKL EILTLHYNRI KGLPTTVGSL SRLRELDVSF NEVEVIPENI
     CFATSLVKLN LSRNFADLRA LPKSIGNLEM LEELDISSNQ IRVLPDSFRC LSRLRVFHAD
     ETPLEFPPRE VVKLGAQAVV KYMNDLNAAR GTNQKKTDRG SFWTWLFSLF GCCKKNQEVG
     LPV