PIRL6_ORYSJ
ID PIRL6_ORYSJ Reviewed; 586 AA.
AC Q6K7R2; A0A0P0VRH5;
DT 16-OCT-2013, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 25-MAY-2022, entry version 106.
DE RecName: Full=Plant intracellular Ras-group-related LRR protein 6;
DE AltName: Full=Intracellular Ras-group-related LRR protein 6;
DE Short=OsIRL6;
GN Name=IRL6; OrderedLocusNames=Os02g0826600, LOC_Os02g58030;
GN ORFNames=P0452F04.20;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP GENE FAMILY, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
RX PubMed=20949308; DOI=10.1007/s11103-010-9704-6;
RA You C., Dai X., Li X., Wang L., Chen G., Xiao J., Wu C.;
RT "Molecular characterization, expression pattern, and functional analysis of
RT the OsIRL gene family encoding intracellular Ras-group-related LRR proteins
RT in rice.";
RL Plant Mol. Biol. 74:617-629(2010).
CC -!- FUNCTION: Leucine-rich repeat protein that likely mediates protein
CC interactions, possibly in the context of signal transduction.
CC {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Widely expressed but at low levels.
CC {ECO:0000269|PubMed:20949308}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype.
CC {ECO:0000269|PubMed:20949308}.
CC -!- SIMILARITY: Belongs to the SHOC2 family. {ECO:0000305}.
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DR EMBL; AP004776; BAD23050.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF10502.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS81699.1; -; Genomic_DNA.
DR EMBL; AK073434; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015623119.1; XM_015767633.1.
DR AlphaFoldDB; Q6K7R2; -.
DR SMR; Q6K7R2; -.
DR STRING; 4530.OS02T0826600-01; -.
DR PaxDb; Q6K7R2; -.
DR PRIDE; Q6K7R2; -.
DR EnsemblPlants; Os02t0826600-01; Os02t0826600-01; Os02g0826600.
DR GeneID; 4331218; -.
DR Gramene; Os02t0826600-01; Os02t0826600-01; Os02g0826600.
DR KEGG; osa:4331218; -.
DR eggNOG; KOG0472; Eukaryota.
DR HOGENOM; CLU_000288_18_23_1; -.
DR InParanoid; Q6K7R2; -.
DR OMA; RINMHAI; -.
DR OrthoDB; 826997at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6K7R2; OS.
DR Gene3D; 3.80.10.10; -; 5.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF13855; LRR_8; 4.
DR SMART; SM00369; LRR_TYP; 15.
DR PROSITE; PS51450; LRR; 17.
PE 2: Evidence at transcript level;
KW Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..586
FT /note="Plant intracellular Ras-group-related LRR protein 6"
FT /id="PRO_0000423615"
FT REPEAT 44..67
FT /note="LRR 1"
FT REPEAT 68..90
FT /note="LRR 2"
FT REPEAT 92..114
FT /note="LRR 3"
FT REPEAT 116..136
FT /note="LRR 4"
FT REPEAT 137..159
FT /note="LRR 5"
FT REPEAT 160..182
FT /note="LRR 6"
FT REPEAT 184..206
FT /note="LRR 7"
FT REPEAT 207..229
FT /note="LRR 8"
FT REPEAT 231..252
FT /note="LRR 9"
FT REPEAT 253..275
FT /note="LRR 10"
FT REPEAT 277..297
FT /note="LRR 11"
FT REPEAT 299..320
FT /note="LRR 12"
FT REPEAT 359..382
FT /note="LRR 13"
FT REPEAT 383..405
FT /note="LRR 14"
FT REPEAT 406..428
FT /note="LRR 15"
FT REPEAT 430..452
FT /note="LRR 16"
FT REPEAT 454..476
FT /note="LRR 17"
FT REPEAT 477..500
FT /note="LRR 18"
FT REPEAT 501..523
FT /note="LRR 19"
FT REPEAT 524..547
FT /note="LRR 20"
FT REPEAT 549..570
FT /note="LRR 21"
FT CONFLICT 316
FT /note="S -> F (in Ref. 4; AK073434)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 586 AA; 63949 MW; 1F6503DDBE0F0F99 CRC64;
MERVLKSARE SGSLNLSNRS LREVPKEVYN NLDTGAQDEK WWEGVDLQKL ILAHNNLEVL
REDLRNLSSL VVLNISHNNI SSLPAAIGDL PLLKSLDVSS NQINAFPEEI GFATALVKVD
CSNNCLTDLP VSLARCLELS ELNASNNTIS VLPDELAGCS KLFRLNLEGN KLVTLSDKMF
MSWTMLTEMN AAKNLLTAIP DGIGALSKLI RLDLHQNKIT LIPPSIKDCS SLAEFYMGNN
LLTSIPEDIG MLSNLGILDL HSNQLKEYPV GACRLKLSFL DLSNNSLSGL PAELGTMTTL
RKLLLTGNPM RTLRSSLVSG PTTALLKYLR SRLSSDEGAS GSGSTPTKDD QIAAARRLSL
SSKELDLSGL GVTSVPPAAW ETNDVMKLDL SKNSIEDLPN ELSLCSSLQS LILSNNKIKR
WPGTVFSSLA SLSLLKLDNN PLAEILATDL EALSKLEVLD LSGSASSLPE PSAVSKLPHL
KELYLRRMKL HGFPDSLLGL KLLRILDLSQ NYLTSVPEGI KDLTSLIELD LSDNNITTLP
PELGLLEPNL QVLKLDGNPL RSIRRTLLER GTKAILKYLK EKLPAE
