PIRL7_ORYSJ
ID PIRL7_ORYSJ Reviewed; 262 AA.
AC B9F655; Q0DU21; Q10Q27;
DT 16-OCT-2013, integrated into UniProtKB/Swiss-Prot.
DT 24-MAR-2009, sequence version 1.
DT 03-AUG-2022, entry version 63.
DE RecName: Full=Plant intracellular Ras-group-related LRR protein 7;
DE AltName: Full=Intracellular Ras-group-related LRR protein 7;
DE Short=OsIRL7;
GN Name=IRL7; OrderedLocusNames=Os03g0212200, LOC_Os03g11360;
GN ORFNames=OsJ_09890;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
RX PubMed=20949308; DOI=10.1007/s11103-010-9704-6;
RA You C., Dai X., Li X., Wang L., Chen G., Xiao J., Wu C.;
RT "Molecular characterization, expression pattern, and functional analysis of
RT the OsIRL gene family encoding intracellular Ras-group-related LRR proteins
RT in rice.";
RL Plant Mol. Biol. 74:617-629(2010).
CC -!- FUNCTION: Leucine-rich repeat protein that likely mediates protein
CC interactions, possibly in the context of signal transduction.
CC {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=B9F655-1; Sequence=Displayed;
CC Name=2;
CC IsoId=B9F655-2; Sequence=VSP_053209, VSP_053210;
CC -!- TISSUE SPECIFICITY: Widely expressed and preferentially in leaf
CC sheathes. {ECO:0000269|PubMed:20949308}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype.
CC {ECO:0000269|PubMed:20949308}.
CC -!- SIMILARITY: Belongs to the SHOC2 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABF94607.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF11267.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; DP000009; ABF94607.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008209; BAF11267.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014959; BAS82926.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE58571.1; -; Genomic_DNA.
DR EMBL; AK069951; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015628623.1; XM_015773137.1. [B9F655-1]
DR AlphaFoldDB; B9F655; -.
DR SMR; B9F655; -.
DR STRING; 4530.OS03T0212200-01; -.
DR PaxDb; B9F655; -.
DR PRIDE; B9F655; -.
DR EnsemblPlants; Os03t0212200-01; Os03t0212200-01; Os03g0212200. [B9F655-2]
DR GeneID; 4332036; -.
DR Gramene; Os03t0212200-01; Os03t0212200-01; Os03g0212200. [B9F655-2]
DR KEGG; osa:4332036; -.
DR eggNOG; KOG0619; Eukaryota.
DR HOGENOM; CLU_1819077_0_0_1; -.
DR OMA; CTIVDIP; -.
DR OrthoDB; 1348484at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; B9F655; OS.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF13855; LRR_8; 1.
DR SMART; SM00369; LRR_TYP; 5.
DR PROSITE; PS51450; LRR; 6.
PE 2: Evidence at transcript level;
KW Alternative splicing; Leucine-rich repeat; Reference proteome; Repeat.
FT CHAIN 1..262
FT /note="Plant intracellular Ras-group-related LRR protein 7"
FT /id="PRO_0000423616"
FT REPEAT 19..42
FT /note="LRR 1"
FT REPEAT 43..66
FT /note="LRR 2"
FT REPEAT 68..89
FT /note="LRR 3"
FT REPEAT 90..112
FT /note="LRR 4"
FT REPEAT 113..135
FT /note="LRR 5"
FT REPEAT 137..158
FT /note="LRR 6"
FT REPEAT 159..181
FT /note="LRR 7"
FT REPEAT 182..204
FT /note="LRR 8"
FT REPEAT 206..231
FT /note="LRR 9"
FT VAR_SEQ 138..142
FT /note="MLLLN -> NQINS (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_053209"
FT VAR_SEQ 143..262
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_053210"
SQ SEQUENCE 262 AA; 28825 MW; 1CDCCA0492876164 CRC64;
MGCCSSRSAD SPASRVTRWR STGIVALRDA RLKVVPNEVL QVGNSLRILD LTNNKIAEIP
QEVGTLVNMQ RLVLAGNLVE SIPANIGYLR NLKILTLDRN KISVLPEELG SLSNLQQLSI
SQNSLSRLPK SVGDLRNMLL LNVSDNKLIA LPESIGGCSS LEELQANGNS IEDVPSSICN
LVCLKSLSLN GNKIRQLPQN LLKDCKALQN ISLHDNPISM DQFQQMDGFT EFEARRRKKF
DKQIDSNVMM SSTALDEGID LN
