PKS10_DICDI
ID PKS10_DICDI Reviewed; 2485 AA.
AC B0G103; Q86AD4; Q86JF0;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 18-MAR-2008, sequence version 1.
DT 03-AUG-2022, entry version 82.
DE RecName: Full=Probable polyketide synthase 10;
DE Short=dipks10;
DE EC=2.3.1.-;
GN Name=pks10; ORFNames=DDB_G0271662;
OS Dictyostelium discoideum (Slime mold).
OC Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales;
OC Dictyosteliaceae; Dictyostelium.
OX NCBI_TaxID=44689;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=12097910; DOI=10.1038/nature00847;
RA Gloeckner G., Eichinger L., Szafranski K., Pachebat J.A., Bankier A.T.,
RA Dear P.H., Lehmann R., Baumgart C., Parra G., Abril J.F., Guigo R.,
RA Kumpf K., Tunggal B., Cox E.C., Quail M.A., Platzer M., Rosenthal A.,
RA Noegel A.A.;
RT "Sequence and analysis of chromosome 2 of Dictyostelium discoideum.";
RL Nature 418:79-85(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=15875012; DOI=10.1038/nature03481;
RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R.,
RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B.,
RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T.,
RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G.,
RA Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N.,
RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E.,
RA Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N.,
RA Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D.,
RA Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T.,
RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D.,
RA Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A.,
RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M.,
RA Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A.,
RA Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y.,
RA Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C.,
RA Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R.,
RA Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.;
RT "The genome of the social amoeba Dictyostelium discoideum.";
RL Nature 435:43-57(2005).
RN [3]
RP IDENTIFICATION.
RX PubMed=17660200; DOI=10.1093/bioinformatics/btm381;
RA Zucko J., Skunca N., Curk T., Zupan B., Long P.F., Cullum J., Kessin R.H.,
RA Hranueli D.;
RT "Polyketide synthase genes and the natural products potential of
RT Dictyostelium discoideum.";
RL Bioinformatics 23:2543-2549(2007).
CC -!- FUNCTION: Probable polyketide synthase. {ECO:0000250}.
CC -!- COFACTOR:
CC Name=pantetheine 4'-phosphate; Xref=ChEBI:CHEBI:47942;
CC Evidence={ECO:0000250};
CC Note=Binds 1 phosphopantetheine covalently. {ECO:0000250};
CC -!- DOMAIN: Modular protein that is responsible for the completion of one
CC condensation-processing cycle. The beta-ketoacyl synthase region is
CC responsible for the actual condensation reaction while the acyl/malonyl
CC transferase region is responsible for incorporating carboxylic acids
CC units onto an acyl carrier protein (ACP) domain (By similarity).
CC {ECO:0000250}.
CC -!- MISCELLANEOUS: Encoded by one of the numerous copies of polyketide
CC synthase genes in chromosome 2.
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DR EMBL; AAFI02000006; EDR41109.1; -; Genomic_DNA.
DR RefSeq; XP_001732967.1; XM_001732915.1.
DR AlphaFoldDB; B0G103; -.
DR SMR; B0G103; -.
DR PaxDb; B0G103; -.
DR EnsemblProtists; EDR41109; EDR41109; DDB_G0271662.
DR GeneID; 8618074; -.
DR KEGG; ddi:DDB_G0271662; -.
DR dictyBase; DDB_G0271662; pks10.
DR eggNOG; KOG1202; Eukaryota.
DR HOGENOM; CLU_000022_31_0_1; -.
DR InParanoid; B0G103; -.
DR PhylomeDB; B0G103; -.
DR PRO; PR:B0G103; -.
DR Proteomes; UP000002195; Chromosome 2.
DR GO; GO:0004315; F:3-oxoacyl-[acyl-carrier-protein] synthase activity; IEA:InterPro.
DR GO; GO:0016491; F:oxidoreductase activity; IEA:InterPro.
DR GO; GO:0006633; P:fatty acid biosynthetic process; IEA:InterPro.
DR Gene3D; 1.10.1200.10; -; 1.
DR Gene3D; 3.10.129.110; -; 1.
DR Gene3D; 3.40.366.10; -; 1.
DR Gene3D; 3.40.47.10; -; 1.
DR Gene3D; 3.40.50.150; -; 1.
DR InterPro; IPR001227; Ac_transferase_dom_sf.
DR InterPro; IPR036736; ACP-like_sf.
DR InterPro; IPR014043; Acyl_transferase.
DR InterPro; IPR016035; Acyl_Trfase/lysoPLipase.
DR InterPro; IPR011032; GroES-like_sf.
DR InterPro; IPR018201; Ketoacyl_synth_AS.
DR InterPro; IPR014031; Ketoacyl_synth_C.
DR InterPro; IPR014030; Ketoacyl_synth_N.
DR InterPro; IPR016036; Malonyl_transacylase_ACP-bd.
DR InterPro; IPR013217; Methyltransf_12.
DR InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR InterPro; IPR032821; PKS_assoc.
DR InterPro; IPR020841; PKS_Beta-ketoAc_synthase_dom.
DR InterPro; IPR020807; PKS_dehydratase.
DR InterPro; IPR042104; PKS_dehydratase_sf.
DR InterPro; IPR020843; PKS_ER.
DR InterPro; IPR013968; PKS_KR.
DR InterPro; IPR009081; PP-bd_ACP.
DR InterPro; IPR029063; SAM-dependent_MTases_sf.
DR InterPro; IPR016039; Thiolase-like.
DR Pfam; PF00698; Acyl_transf_1; 1.
DR Pfam; PF16197; KAsynt_C_assoc; 1.
DR Pfam; PF00109; ketoacyl-synt; 1.
DR Pfam; PF02801; Ketoacyl-synt_C; 1.
DR Pfam; PF08659; KR; 1.
DR Pfam; PF08242; Methyltransf_12; 1.
DR Pfam; PF00550; PP-binding; 1.
DR Pfam; PF14765; PS-DH; 1.
DR SMART; SM00827; PKS_AT; 1.
DR SMART; SM00829; PKS_ER; 1.
DR SMART; SM00825; PKS_KS; 1.
DR SUPFAM; SSF47336; SSF47336; 1.
DR SUPFAM; SSF50129; SSF50129; 1.
DR SUPFAM; SSF51735; SSF51735; 1.
DR SUPFAM; SSF52151; SSF52151; 1.
DR SUPFAM; SSF53335; SSF53335; 1.
DR SUPFAM; SSF53901; SSF53901; 1.
DR SUPFAM; SSF55048; SSF55048; 1.
DR PROSITE; PS00606; B_KETOACYL_SYNTHASE; 1.
DR PROSITE; PS50075; CARRIER; 1.
PE 3: Inferred from homology;
KW Phosphopantetheine; Phosphoprotein; Reference proteome; Transferase.
FT CHAIN 1..2485
FT /note="Probable polyketide synthase 10"
FT /id="PRO_0000376885"
FT DOMAIN 2410..2485
FT /note="Carrier"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258"
FT REGION 165..218
FT /note="Beta-ketoacyl synthase"
FT REGION 636..669
FT /note="Acyl/malonyl transferase"
FT ACT_SITE 184
FT /note="For beta-ketoacyl synthase activity"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10022"
FT ACT_SITE 646
FT /note="For acyl/malonyl transferase activity"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU10022"
FT MOD_RES 2447
FT /note="O-(pantetheine 4'-phosphoryl)serine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258"
SQ SEQUENCE 2485 AA; 283234 MW; ADB1B3C91F20D464 CRC64;
MYLEKYQEDD IAIIGVGLRL PGEESGGGVV GELLNDSPQN FWNNLKKGFN GISKTNERWS
ENYSKLGEIS NGYAGVLPLE ELKSFDPLFF GISPSEASTI DPQQRLLLKT TWESLEDAGI
DHQSIRGSDC SVFIGSSTTE YRESIVNINE QYLNIFGTYA HGIANRISYC FDLRGESVTL
DTACASSGTA ISMGAQCIKN GKSKLSIVGG VNLIVDTTNI KAFSYLNMLS TSGVCRPFDI
GADGLLRGEG VGTIVLKSLK DSIRDGNKIY CIIKGSSYNV DGNGNSDKQN FYAPSSISQS
DNIKLAIKST NGSITCDDID YFECHGTGTP TGDPIETKGI SMAFNRSKQN PLLIGSLKGS
SGHSEAASGV IGVIKCCLIF KNKSLVPCVN FSKPNPQIKF EEWNLKVVTE PIPFTSLPSR
KLNNKPISIA INNFGVTGAN CCIILSEFIN NNTNDNLKQI NKSFLIPFSA NSVKSLENYK
LKLNSIINEN DYYLNNSAIF NGFVNNQIYN KSKSLSQRSV YVASNLNELV DGKVNFKTSN
SKSSNFSILK KKPIVLFVFS GQGSQYNTMF DQLYNDEIIF KESIDRIDNS LFKYYGYSVF
EKFKSSNLNS IHEPLIAQAA ISMLNISLFE LYKHWGIEAS FIVGHSLGEI SAAHCSGMID
LETLCYIIYH RSIAQIKTHG NGRMLSINQS SDEYISKYSS KYADLEIACY NSQNSIVVAG
NEHKLNQLFN ELKENNEFAT MIASQSSFHT SNQCITKDDI FKLQFTANLP LIPIFSTVTT
NLFDNSTLFN SSYIYDNIIC PVRFEQTISN FYKHIDDDND KSDVEVVIIE LAPHPTLSYY
LKQMKPVIEN KDIKVNVYSA LHKLKNSTKE FQKVISQLYC DNGININFKC QLENQVNMYD
TIFSLPNYQW DDQKYWKVDY THSRSYINGP PITILGNESY NSPYLSRETY IDIKRNPFKY
LNGHQIKMKI YFPGMGYIDN LLKLFKNNHK NIIIDQIEFI APLILNEGIN QCVQTNVNQI
EINEYSLNCY YKDIKSNEWV KTCIGNFHIS NNLFTQQRNY NINQLINEKC NYSLIERDDL
YDMIKIKTGL NYSGDFKGIN KCYIGNSCSL SEVSMNLPDN LPDKESFFNC TILDSCTHGF
LVLIDYQCQL VFHKVEGLRY YNSNIPTDRN KHKNIYVYSI LNQILNDSFH SSVIIMLEDG
TVLIEIDNLI SKSLTPIQDP LKIEYPMNEL FSTHLQPKDS PFPLISMTFK SKFKNINEIK
NEFMLNCCKN FISNQFLSNI INRTNIKLNE IKTLTIDQLV KLYCLYNNNE RLFRFVFETI
KKYDYNSNHS NNENEMVLKD DGIYQVLDTS IKVISKLLFP YENDKEDPIT ETPTSLFENG
LLDKFYGTNN FMTTTIQRNL ITDIIINSLK PILNQKLVIR IVELGGGVCS FTVDFLEKLD
KLLKENPFHE IEIEFTWSDI SSSFIPEAKK KLEPFSNNIN IVYRSIDIEK EFKKQGLKHS
YFDFIILTNV LHVVKNIGNS LDQLYKILSP NGQILLIEPY VSIVNDSIFG SFSQWWSFED
TEIRKTNCCM EPNSWLQVFK NHNFKNTNSY EEDGSCCYVI HSQKPPLLYG LNELKYTQSP
NQIIIYGNEN ENENENENYT IKFNKSVIKI SNIDQFNQSI LNSQINNETI IYFTKSINQL
DVNNFKFVTF EYIQINKLLL KYKLKSKHVL ITLNSRDSNY LSASLVGAKR YFEEYPQLSL
KAIDFDLQSL EEIKDIQSLL IELLDENKNT QNDYIIKNCQ VYYERVKKEI ISKSKFISNS
FENNDSLITQ LIDSEYKLTS NKPIFKVKEK EEGEEEVEIK VLSTTIGNVN DGDNFGEFSG
IITRVCSNSN FKIGEKVYGF GYNTTSSHIV VNGDWIYYKP LNISNNNAAS IPYKYLEVLY
GLYNIGELDE NENILIHLNN NINNNNNNIS TLNILKWKGH KGLIYVTVDS NEMEIYVNDN
FGGFISGVFI LILKCLNSTS RIINFNYLNN NNNDNNDLEF FYKYCRKLNI GYHFIDLKKL
IPIRRRGRII KDLFKEISKA IENNEINLLP IIDYSNLNIN HAIQMVKNEK NMVHTIVIEN
NEDVLENLLK EHSNNSTYSI IKSDYKISEN HLGKNLIITG QIGVALEVLK WICKYSKGVE
NIIILSKSLI KWELKLLIDK TYNSKENNQI KFHFNTIDIS NSNELTNTLN QLLKDTNIDN
IDSIFHYAFT KVVSEVEDID LNQLNLSHGA KTMGAINLHN ESVNRCWNLK NFINASSTVT
LAGSPGQCTY VCANSVLDSL SRYRKSIGLP SICSYYGSIK SGIVLRSESI ATSLEKQGYV
HVSMNKFLGA LDLQIQNPNL STNLIVSNFN FKLFKNNPQH SIIDKFEHQI NENNSKLEIS
TNNNPSTSTE SNKGIDGLLL SKVSELLSIN ETNFNADITL IDYGADSLIT SQLKNFIEKE
FSLSVTSQQL QRNSINQLIK FLNKK